27 papers · ranked by Valyu relevance
David Meijer, Marnix H. Medema, Justin J. J. van der Hooft
Effective visualization of small molecules is paramount in conveying concepts and results in cheminformatics. Scalable vector graphics (SVG) are preferred for creating such visualizations, as SVGs can be easily altered in post-production and exported to other formats. A wide spectrum of software applications already…
Paula C. Sanematsu
The development of physics-based 3D models that investigate the behavior of biological tissues requires effective and efficient visualization tools. The open-source software ParaView has such capabilities, but often impose a steep learning curve due to the use of the Visualization Toolkit (VTK) data structures. To…
Peter Hastreiter, Barbara Bischoff, Rudolf Fahlbusch, Arnd Doerfler + 2 more
'Michael Buchfelder' 'Ramin Naraghi'] Background Reliable 3D visualization of neurovascular relationships in the posterior fossa at the surface of the brainstem is still critical due to artifacts of imaging. To assess neurovascular compression syndromes more reliably, a new approach of 3D visualization based on…
Shuo Han, Alain Chen, Soonam Lee, Chichen Fu + 7 more
The advancement of high content optical microscopy has enabled the acquisition of very large 3D image datasets. Image analysis tools and three dimensional visualization are critical for analyzing and interpreting 3D image volumes. The analysis of these volumes require more computational resources than a biologist may…
Kevin A. Yamauchi, Alister Burt
With recent advances in three-dimensional bioimaging acquisition and analysis methods, imaging data are an important tool for unveiling the complex architecture of biological organisms. However, extracting insights from these complex datasets requires interactive exploration as well as annotation for training…
Yan Chen, Masaharu Kobayashi, Changyoung Yuhn, Marie Oshima
Recent advancements in computational performance and medical simulation technology, have made significant strides, particularly in predictive diagnosis. This study focuses on the blood flow simulation reduced-order models, which provide swift and cost-effective solutions for complex vascular systems, positioning them…
Jonathan Schwartz, Chris Harris, Jacob Pietryga, Huihuo Zheng + 13 more
'Prashant Kumar' 'Anastasiia Visheratina' 'Nicholas A. Kotov' 'Brianna Major' 'Patrick Avery' 'Peter Ercius' 'Utkarsh Ayachit' 'Berk Geveci' 'David A. Muller' 'Alessandro Genova' 'Yi Jiang' 'Marcus D. Hanwell' 'Robert Hovden'] Jonathan Schwartz 1 , Chris Harris2 , Jacob Pietryga1 , Huihuo Zheng3 , Prashant Kumar 4 …
Banno, Tatsuro, Takenawa, Mizuki + 6 more
—We introduce a novel urban visualization system that integrates 3D urban model (CityGML) and 360° walkthrough videos. By aligning the videos with the model and dynamically projecting relevant video frames onto the geometries, our system creates photorealistic urban visualizations, allowing users to intuitively…
Junming Wang, Wenjun Li, Aishe Dun, Ning Zhong + 1 more
Background 3D visualization technology applies computers and other devices to create a realistic virtual world for individuals with various sensory experiences such as 3D vision, touch, and smell to gain a more effective understanding of the relationships between real spatial structures and organizations. The purpose…
Beizhen Zhao, Yifan Zhou, Gaochao Song, Ziran Yin + 1 more
While 3D Gaussian Splatting (3DGS) has revolutionized real-time photorealistic view synthesis, its fundamental reliance on symmetric Gaussian distributions introduces visual artifacts that hinder accurate spatial data exploration. Specifically, symmetric kernels struggle to capture shape and color discontinuities …
Junpeng Wang, Christoph Neuhauser, Jun Wu, Xifeng Gao + 1 more
'Rüdiger Westermann'] We present the 3D Trajectory-based Stress Visualizer (3D-TSV), a visual analysis tool for the exploration of the principal stress directions in 3D solids under load. 3D-TSV provides a modular and generic implementation of key algorithms required for a trajectory-based visual analysis of principal…
Hootan Roshandel, Matthew Shammami, Shiyun Lin, Yin-Pok Wong + 1 more
The rise of virtual and online education in recent years has led to the development and popularization of many online tools, notably 3D models and augmented reality (AR), for visualizing various structures in chemical sciences. The majority of the developed tools focus on either small molecules or biological systems…
Authors not listed
For decades, molecular visualization software has been fundamental to education and research in chemistry, structural biology, and materials science. These tools have enabled the inspection of structures, dynamics, and interactions, yet their reliance on two-dimensional (2D) interfaces imposes persistent limitations.…
Roberta Mota, Ehud Sharlin, Usman Alim
We present a novel lens technique to support the identification of heterogeneous features in direct volume rendering (DVR) visualizations. In contrast to data-centric transfer function (TF) design, our imagedriven approach enables users to specify target features directly within the visualization using deformable…
Xiangxiang Ren, Tianhao Xie, Xiaoshi Jin, Litao Liu + 2 more
The advancement of precision surgery demands increased operative accuracy, underscoring the growing importance of three-dimensional (3D) visualization technology as a key tool for overcoming the limitations of two-dimensional (2D) imaging. Over the past decade, this technology has evolved from a post-processing tool…
Ki Hoon Kwon, Munkh-Uchral Erdenebat, Nam Kim, Anar Khuderchuluun + 7 more
'Shariar Md Imtiaz' 'Min Young Kim' 'Ki-Chul Kwon' 'Gastone C. Castellani' 'Antonella Carbonaro' 'Filippo Piccinini' 'Peter Horvath'] We propose a light-field microscopy display system that provides improved image quality and realistic three-dimensional (3D) measurement information. Our approach acquires both…
Xiang Chen, Teena Thakur, Anand D. Jeyasekharan, Touati Benoukraf + 1 more
Confocal microscopy has evolved as a widely adopted imaging technique in molecular biology and is frequently utilized to achieve accurate subcellular localization of proteins. Applying colocalization analysis on image z-stacks obtained from confocal fluorescence microscopes is a dependable method to reveal the…
Gwendal Fouché, Ferran Argelaguet, Emmanuel Faure, Charles Kervrann
The analysis of multidimensional time-varying datasets faces challenges, notably regarding the representation of the data and the visualization of temporal variations. We propose an extension of the well-known Space-Time Cube (STC) visualization technique in order to visualize time-varying 3D spatial data, taking…
Peter Hastreiter, Olga Maliachova, Rudolf Fahlbusch, Arnd Doerfler + 2 more
'Michael Buchfelder' 'Ramin Naraghi'] Background Neurovascular relationships in the posterior fossa are more frequently investigated due to the increasing availability of 3.0 Tesla MRI. For an assessment with 3D visualization, no systematic analyzes are available so far and the question arises as to whether 3.0 Tesla…
Yaning Li, Ruijie Cao, Wei Ren, Yunzhe Fu + 5 more
In recent years, notable progress has been achieved in both the hardware and algorithms of structured illumination microscopy (SIM). Nevertheless, the advancement of 3DSIM has been impeded by challenges arising from the speed and intricacy of polarization modulation. In this study, we introduce a high-speed modulation…
Chunpeng Li, Ya-tang Li
Understanding the computations of convolutional neural networks requires effective visualization of their kernels. While maximal activation methods have proven successful in highlighting the preferred features of 2D convolutional kernels, directly applying these techniques to 3D convolutions often leads to…
Jiayi Hong, Rostyslav Hnatyshyn, Ebrar A. D. Santos, Ross Maciejewski + 1 more
'Ross Maciejewski' 'Tobias Isenberg'] Abstract—We examine visual representations of data that make use of combinations of both 2D and 3D data mappings. Combining 2D and 3D representations is a common technique that allows viewers to understand multiple facets of the data with which they are interacting. While 3D…
Murat Cihan Sorkun, Dajt Mullaj, J. M. Vianney A. Koelman, Süleyman Er
Visualizing chemical spaces streamlines the analysis of molecular datasets by reducing the information to human perception level, hence it forms an integral piece of molecular engineering, including chemical library design, high-throughput screening, diversity analysis, and outlier detection. We present here ChemPlot…
Olivier Rukundo, Antonio Rispo
Essential for improving the accuracy and reliability of bowel cancer screening, three-dimensional (3D) surface reconstruction using capsule endoscopy (CE) images remains challenging due to CE hardware and software limitations. This report generally focuses on challenges associated with 3D visualization and specifically…
Kelsey Hatzell, Yanjie Zheng
X-ray Computed Tomography (CT) is a non-invasive, non-destructive approach to imaging materials, material systems and engineered components in two- and three- dimensions. Acquisition of 3D images requires the collection of hundreds or thousands of through-thickness X-ray radiographic images from different angles. Such…
Authors not listed
The screening of chemical libraries is an essential starting point in the drug discovery process. While some researchers desire a more thorough screening of drug targets against a narrower scope of molecules, it is not uncommon for diverse screening sets to be favored during early stages of drug discovery. However, a…
Gaurav Bahuguna, Fernando Patolsky
Electrochemical reactions are the unrivaled backbone of next generation energy storage, energy conversion and healthcare devices. However, the in-situ real-time visualization of electrochemical reactions, which can shed light on various critical unknown insights on the electrochemical processes, still remains the…