15 papers · ranked by Valyu relevance
Roberto Vera, Yasset Perez-Riverol, Sonia Perez, Balázs Ligeti + 2 more
The Java BioWareHouse (JBioWH) project is an open-source platform-independent programming framework that allows a user to build his/her own integrated database from the most popular data sources. JBioWH can be used for intensive querying of multiple data sources and the creation of streamlined task-specific data sets…
Mark P Waller, Thomas Dresselhaus, Jack Yang
Here, we present just a collection of beans (JACOB): an integrated batch-based framework designed for the rapid development of computational chemistry applications. The framework expedites developer productivity by handling the generic infrastructure tier, and can be easily extended by user-specific scientific code.…
Andreas Holzinger, Mario Zupan
Background Professionals in the biomedical domain are confronted with an increasing mass of data. Developing methods to assist professional end users in the field of Knowledge Discovery to identify, extract, visualize and understand useful information from these huge amounts of data is a huge challenge. However, there…
Andreas Prlić, Andrew Yates, Spencer E. Bliven, Peter W. Rose + 12 more
'Julius Jacobsen' 'Peter V. Troshin' 'Mark Chapman' 'Jianjiong Gao' 'Chuan Hock Koh' 'Sylvain Foisy' 'Richard Holland' 'Gediminas Rimša' 'Michael L. Heuer' 'H. Brandstätter–Müller' 'Philip E. Bourne' 'Scooter Willis'] Motivation: BioJava is an open-source project for processing of biological data in the Java…
Elishai Ezra Tsur
Databases are imperative for research in bioinformatics and computational biology. Current challenges in database design include data heterogeneity and context-dependent interconnections between data entities. These challenges drove the development of unified data interfaces and specialized databases. The curation of…
Diego Alonso, Francisco Sánchez-Ledesma, Pedro Sánchez, Juan A. Pastor + 1 more
'Juan A. Pastor' 'Bárbara Álvarez'] The use of frameworks and components has been shown to be effective in improving software productivity and quality. However, the results in terms of reuse and standardization show a dearth of portability either of designs or of component-based implementations. This paper, which is…
Fahmi H. Quradaa, Sara Shahzad, Rashad Saeed, Mubarak M. Sufyan + 1 more
In software development, it’s common to reuse existing source code by copying and pasting, resulting in the proliferation of numerous code clones-similar or identical code fragments-that detrimentally affect software quality and maintainability. Although several techniques for code clone detection exist, many encounter…
Andrei Olaru, Monica Pricope, Roberto Teti
Current multi-agent frameworks usually use centralized, fixed communication infrastructures for the entities that are deployed using them. This decreases the robustness of the system but is less challenging when having to deal with mobile agents that can migrate between nodes. We introduce, in the context of the…
David Bouzaglo, Israel Chasida, Elishai Ezra Tsur
The integration of cloud resources with federated data retrieval has the potential of improving the maintenance, accessibility and performance of specialized databases in the biomedical field. However, such an integrative approach requires technical expertise in cloud computing, usage of a data retrieval engine and…
Petr Ježek, Roman Mouček
The article deals with and discusses two main approaches in building semantic structures for electrophysiological metadata. It is the use of conventional data structures, repositories, and programming languages on one hand and the use of formal representations of ontologies, known from knowledge representation, such as…
Ola Spjuth, Tobias Helmus, Egon L Willighagen, Stefan Kuhn + 5 more
'Martin Eklund' 'Johannes Wagener' 'Peter Murray-Rust' 'Christoph Steinbeck' 'Jarl ES Wikberg'] Background There is a need for software applications that provide users with a complete and extensible toolkit for chemo- and bioinformatics accessible from a single workbench. Commercial packages are expensive and closed…
Fatima Schera, Gabriele Weiler, Elias Neri, Stephan Kiefer + 1 more
'Norbert Graf'] The European project p-medicine creates an information technology infrastructure that facilitates the development from current medical practice to personalised medicine. The main access point to this infrastructure is the p-medicine portal that provides clinicians, patients, and researchers a platform…
Soojin Park, Sungyong Park
The middleware framework for IoT collaboration services should provide efficient solutions to context awareness and uncertainty issues among multiple collaboration domains. However, existing middleware frameworks are mostly limited to a single system, and developing self-adaptive IoT collaboration services using…
Yu-an Tan, Shuo Feng, Xiaochun Cheng, Yuanzhang Li + 1 more
Information leaks can occur through many Android applications, including unauthorized access to sensors data. Hooking is an important technique for protecting Android applications and add security features to them even without its source code. Various hooking frameworks are developed to intercept events and process…
Gunther Eysenbach, Donald Cowan, Mario Drobics, Jonathan Rawstorn + 4 more
Background Although there have been significant advances in network, hardware, and software technologies, the health care environment has not taken advantage of these developments to solve many of its inherent problems. Research activities in these 3 areas make it possible to apply advanced technologies to address many…