14 papers · ranked by Valyu relevance
Kevin J. Theisen
This is one part of a series of reviews concerning the application of programming languages in chemistry, edited by Dr. Rajarshi Guha. This article reviews the JavaScript technology as it applies to the chemistry discipline. A discussion of the history, scope and technical details of the programming language is…
Bruno Bienfait, Peter Ertl
Background A molecule editor, i.e. a program facilitating graphical input and interactive editing of molecules, is an indispensable part of every cheminformatics or molecular processing system. Today, when a web browser has become the universal scientific user interface, a tool to edit molecules directly within the web…
Abdullah Sheneamer, Khalid Raza
System security for web-based applications is paramount, and for the avoidance of possible cyberattacks it is important to detect vulnerable JavaScript functions. Developers and security analysts have long relied upon static analysis to investigate vulnerabilities and faults within programs. Static analysis tools are…
Samuel A. Smits, Cleber C. Ouverney, Art F. Y. Poon
Background Many software packages have been developed to address the need for generating phylogenetic trees intended for print. With an increased use of the web to disseminate scientific literature, there is a need for phylogenetic trees to be viewable across many types of devices and feature some of the interactive…
Alexis Kalderimis, Radek Stepan, Julie Sullivan, Rachel Lyne + 2 more
'Michael Lyne' 'Gos Micklem'] Summary: The DAGViewer BioJS component is a reusable JavaScript component made available as part of the BioJS project and intended to be used to display graphs of structured data, with a particular emphasis on Directed Acyclic Graphs (DAGs). It enables users to embed representations of…
Zhining Zhang, Liang Wan, Kun Chu, Shusheng Li + 3 more
'Lu Tang' 'Sathishkumar V E'] Currently, JavaScript malicious code detection methods are becoming more and more effective. Still, the existing methods based on deep learning are poor at detecting too long or too short JavaScript code. Based on this, this paper proposes an adaptive code length deep learning network…
Martin Page, Dan MacLean, Christian Schudoma
Background To cope with the ever-increasing amount of sequence data generated in the field of genomics, the demand for efficient and fast database searches that drive functional and structural annotation in both large- and small-scale genome projects is on the rise. The tools of the BLAST+ suite are the most widely…
Andrew C. R. Martin
The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is…
Paul Leger, Felipe Ruiz, Hiroaki Fukuda, Nicolás Cardozo + 1 more
'Muhammad Aleem'] JavaScript Web applications are a common product in industry. As with most applications, Web applications can acquire software flaws (known as bugs), whose symptoms are seen during the development stage and, even worse, in production. The use of debuggers is beneficial for detecting bugs.…
Stian Reimers, Neil Stewart
Web-based research is becoming ubiquitous in the behavioral sciences, facilitated by convenient, readily available participant pools and relatively straightforward ways of running experiments: most recently, through the development of the HTML5 standard. Although in most studies participants give untimed responses…
Jack W Roddy, George T Lesica, Travis J Wheeler
We present SODA, a lightweight and open-source visualization library for biological sequence annotations that enables straightforward development of flexible, dynamic and interactive web graphics. SODA is implemented in TypeScript and can be used as a library within TypeScript and JavaScript.
Wolf D Ihlenfeldt, Evan E Bolton, Stephen H Bryant
PubChem is an important public, Web-based information source for chemical and bioactivity information. In order to provide convenient structure search methods on compounds stored in this database, one mandatory component is a Web-based drawing tool for interactive sketching of chemical query structures. Web-enabled…
Michael Muin, Paul Fontelo
Background The project aims to create an alternative search interface for MEDLINE/PubMed that may provide assistance to the novice user and added convenience to the advanced user. An earlier version of the project was the 'Slider Interface for MEDLINE/PubMed searches' (SLIM) which provided JavaScript slider bars to…
Stian Reimers, Neil Stewart
Substantial recent research has examined the accuracy of presentation durations and response time measurements for visually presented stimuli in Web-based experiments, with a general conclusion that accuracy is acceptable for most kinds of experiments. However, many areas of behavioral research use auditory stimuli…