Search · four archives
Search · four archives
16 papers · ranked by Valyu relevance
Raji Tajudeen, Mosoka Papa Fallah, John Ojo, Tamrat Shaweno + 11 more
The DHIS2 system enabled real-time tracking of vaccine distribution and administration to facilitate data-driven decisions. Experts from the Africa Centres for Disease Control and Prevention (Africa CDC) Monitoring and Evaluation (M&E) and Management Information System (MIS) teams, with support from the Health…
Dongmin Shin, Jeonghwan Henry Kim, Rakbin Sung, Junil Kim + 2 more
User requests are initiated from a web client built on (, [https://github.com/vuejs/core]()), which relies on Drawflow (, [https://github.com/jerosoler/Drawflow]()) for visual programming and Plotly () for data visualization ([sup1] at Bioinformatics online). The user requests are routed through an NGINX () web server…
Detlef-M. Smilgies, Ruipeng Li, S. Disch
A program is described for visualizing grazing-incidence scattering data and interactive indexing of the observed diffraction spots.
Thomas C Smits, Nikolay Akhmetov, Tiffany S Liaw, Mark S Keller + 3 more
scellop is available as a Python package on PyPI ([https://pypi.org/project/scellop/]()) and a JavaScript package on npm ([https://www.npmjs.com/package/scellop]()). The Python package provides a Jupyter widget implemented with anywidget (). scellop is implemented in React, using visx ([https://airbnb.io/visx/]()) to…
Hector Torres, Efe Ozturk, Zhou Fang, Nicholas Zhang + 4 more
Biomedical data visualization is critical for interpreting complex datasets, yet the clarity and quality of visualizations vary widely across tools and applications. This study introduces a comprehensive framework for evaluating biomedical figures and benchmarking visualization platforms. We developed Metrics for…
Margaret Cook, Stella Anastasakis, Adel Heydarabadipour, Janis Shin + 4 more
Kinetic metabolic models provide invaluable insights into cellular metabolism, supporting applications in synthetic biology, metabolic engineering, and systems biology. However, reproducibility and utility of these models hinge on clear and rigorous documentation, standardized annotation, and accessible visualization.…
Jie Guo, Huiyuan Shi, Yucheng Kong, Jiazhen Du + 3 more
The intersection between mental maps and visualization has attracted increasing research attention in recent years, as they exhibit a natural functional complementarity. Mental maps research explores how humans construct in-mind representations of the external world through the view of cognitive science, while…
Adel Heydarabadipour, Lucian Smith, Joseph L. Hellerstein, Herbert M. Sauro
Antimony is a human-readable language for defining and sharing models developed by the systems biology community. It enables scientists to describe biochemical networks with a simple syntax, while supporting seamless conversion to and from the Systems Biology Markup Language (SBML) community standard. Since Antimony’s…
Dan Vasilescu, James C. Schaff, Ion I. Moraru, Michael L. Blinov
Mechanistic modeling in biology aims to describe biological processes based on details on molecular mechanisms and interactions. Rule-based mechanistic modeling enables the simulation of biological systems while explicitly accounting for molecular details, such as protein domains and their specific interactions.…
Deklin Parker, Samuel W. Foster, Tina Dahlseid, Dwight R. Stoll + 1 more
Visualization Approach for Two-Dimensional Liquid Chromatography with Parallel Column Arrays Authors: Deklin Parker, Samuel W. Foster, Tina Dahlseid, Dwight R. Stoll, James P. Grinias Two-dimensional liquid chromatography (2D-LC) is one of the highest-resolution techniques available to chromatographers for the…
Jaka Kokošar, Cagatay Turkay, Luka Ausec, Miha Štajdohar + 2 more
We introduce a visual analytics methodology for survival analysis, and propose a framework that defines a reusable set of visualization and modeling components to support exploratory and hypothesis-driven biomarker discovery. Survival analysis-essential in biomedicine-evaluates patients‘ survival rates and the onset of…
Jianhui Yang, Xiaoqing Huang, Shurong Wu, Yuanyuan Zhang + 5 more
Background Intravenous drug incompatibility is a significant medication safety hazard, particularly in complex multidrug regimens. Traditional text-based, pairwise query methods are inefficient and impose a substantial cognitive load on clinicians. While network visualization has the potential to address these…
Liza Hadley, Nick Holliman, Kai Xu, Edyta Bogucka + 5 more
Communicating scientific ideas to policy actors is a longstanding challenge, especially in epidemiological modeling where evidence is inherently uncertain. Central to this communication is visualization-the graphic representation of complex epidemiological modeling concepts through figures, plots, and charts. Effective…
Christian A. Steinparz, Andreas Hinterreiter, Labinot Bajraktari, Vitaly Sedlyarov + 3 more
Introduction Validating large knowledge graphs with the Shapes Constraint Language (SHACL) often yields violation reports too large to interpret and trace to root causes, especially in industry-scale datasets such as pharmaceutical omics pipelines. Methods We present SHACLens, an interactive visualization…
Misbah Mehboob Awan, Muhammad Waseem Anwar, Wasi Haider Butt, Farooque Azam + 1 more
Embedded systems often require multiple representations for design, verification, and implementation, ranging from low-level programming languages to high-level formal models and domain-specific abstractions. Generally, synchronization among different representations or notations is achieved manually, a process that is…
Yao Cong, Hongwei Mo, Ying Shen
Visual question answering (VQA) as an interdisciplinary task of computer vision and natural language processing, estimating the model’s visual reasoning ability, which requires the integration of image information extraction technology and natural language understanding technology. The testing on professional benchmark…