Search · four archives
Search · four archives
14 papers · ranked by Valyu relevance
Pauli Virtanen, Ralf Gommers, Travis E. Oliphant, Matt Haberland + 30 more
SciPy is an open-source scientific computing library for the Python programming language. Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages, over 100,000 dependent repositories…
Charles R. Harris, K. Jarrod Millman, Stéfan J. van der Walt, Ralf Gommers + 22 more
'Ralf Gommers' 'Pauli Virtanen' 'David Cournapeau' 'Eric Wieser' 'Julian Taylor' 'Sebastian Berg' 'Nathaniel J. Smith' 'Robert Kern' 'Matti Picus' 'Stephan Hoyer' 'Marten H. van Kerkwijk' 'Matthew Brett' 'Allan Haldane' 'Jaime Fernández del Río' 'Mark Wiebe' 'Pearu Peterson' 'Pierre Gérard-Marchant' 'Kevin Sheppard'…
Berk Ekmekci, Charles E. McAnany, Cameron Mura, Francis Ouellette
Computing has revolutionized the biological sciences over the past several decades, such that virtually all contemporary research in molecular biology, biochemistry, and other biosciences utilizes computer programs. The computational advances have come on many fronts, spurred by fundamental developments in hardware…
Ralf Biehl, Alejandro Fernandez-Martinez
The aim of Jscatter is the processing of experimental data and physical models with the focus to enable the user to develop/modify their own models and use them within experimental data evaluation. The basic structures dataArray and dataList contain matrix-like data of different size including attributes to store…
Eilif Muller, James A. Bednar, Markus Diesmann, Marc-Oliver Gewaltig + 2 more
'Michael Hines' 'Andrew P. Davison'] This Research Topic of Frontiers in Neuroinformatics is dedicated to the memory of Rolf Kötter (1961-2010), who was the Frontiers Associate Editor responsible for this Research Topic, and who gave us considerable support and encouragement during the process of conceiving and…
Maximilian H. Kriebel, Paweł Tecmer, Marta Gałyńska, Aleksandra Leszczyk + 1 more
Coupled-Cluster Implementations: A Comparison Between CPUs and GPUs Authors: Maximilian H. Kriebel, Paweł Tecmer, Marta Gałyńska, Aleksandra Leszczyk, Katharina Boguslawski In this work, we benchmark several Python routines for time and memory requirements to identify the optimal choice of the tensor contraction…
Konrad Hinsen
The lack of replicability and reproducibility of scientific studies based on computational methods has lead to serious mistakes in published scientific findings, some of which have been discovered and publicized recently. Many strategies are currently pursued to improve the situation. This article reports the first…
Yury V. Zaytsev, Abigail Morrison
NEST is a simulator for large-scale networks of spiking point neuron models (Gewaltig and Diesmann, [11]). Originally, simulations were controlled via the Simulation Language Interpreter (SLI), a built-in scripting facility implementing a language derived from PostScript (Adobe Systems, Inc., [1]). The introduction of…
Greg Wilson, D. A. Aruliah, C. Titus Brown, Neil P. Chue Hong + 10 more
'Matt Davis' 'Richard T. Guy' 'Steven H. D. Haddock' 'Kathryn D. Huff' 'Ian M. Mitchell' 'Mark D. Plumbley' 'Ben Waugh' 'Ethan P. White' 'Paul Wilson' 'Jonathan A. Eisen'] We describe a set of best practices for scientific software development, based on research and experience, that will improve scientists'…
Michael Riesch, Tien Dat Nguyen, Christian Jirauschek, Sunghwan Kim
Science depends heavily on reliable and easy-to-use software packages, such as mathematical libraries or data analysis tools. Developing such packages requires a lot of effort, which is too often avoided due to the lack of funding or recognition. In order to reduce the efforts required to create sustainable software…
James S. Sims, John G. Hagedorn, Peter M. Ketcham, Steven G. Satterfield + 14 more
'Steven G. Satterfield' 'Terence J. Griffin' 'William L. George' 'Howland A. Fowler' 'Barbara A. am Ende' 'Howard K. Hung' 'Robert B. Bohn' 'John E. Koontz' 'Nicos S. Martys' 'Charles E. Bouldin' 'James A. Warren' 'David L. Feder' 'Charles W. Clark' 'B. James Filla' 'Judith E. Devaney'] The rate of scientific discovery…
Yizi Shang, Ling Shang, Chuanchang Gao, Guiming Lu + 2 more
'Dongdong Jia'] This paper is to make further research on facilitating the large-scale scientific computing on the grid and the desktop grid platform. The related issues include the programming method, the overhead of the high-level program interface based middleware, and the data anticipate migration. The block based…
Konrad Hinsen
Computational techniques have revolutionized many aspects of scientific research over the last few decades. Experimentalists use computation for data analysis, processing ever bigger data sets. Theoreticians compute predictions from ever more complex models. However, traditional articles do not permit the publication…
James S. Sims, William L. George, Steven G. Satterfield, Howard K. Hung + 21 more
'Howard K. Hung' 'John G. Hagedorn' 'Peter M. Ketcham' 'Terence J. Griffin' 'Stanley A. Hagstrom' 'Julien C. Franiatte' 'Garnett W. Bryant' 'W. Jaskólski' 'Nicos S. Martys' 'Charles E. Bouldin' 'Vernon Simmons' 'Oliver P. Nicolas' 'James A. Warren' 'Barbara A. am Ende' 'John E. Koontz' 'B. James Filla' 'Vital G.…