4 papers · ranked by Valyu relevance
Christoph Li, Josh Lawrimore, Dustin Moraczewski, Adam G. Thomas
labapi is a Python library that enables computational workflows to connect to LabArchives’ electronic lab notebook (ELN). Without an Application Programming Interface (API) connection, researchers must manually add workflow outputs through the LabArchives web interface, navigating to the appropriate page and uploading…
Huihai Wu, Ashleigh Lister, Iain Macaulay, Katie Long + 10 more
Single-cell and spatial transcriptomics are transforming our understanding of cellular heterogeneity and tissue organization, yet their analytical complexity remains a major bottleneck. Here, we present EISCA and EISTA, two standardized, end-to-end pipelines for single-cell RNA- seq and imaging-based spatial…
Julie Boisard, Shelby K Williams, Andrew J Roger, Courtney W Stairs
Mitochondrial proteome reconstruction from eukaryotic sequence data typically relies on prediction of mitochondrial targeting signals (MTSs). However, MTS predictors are primarily trained on model organisms and may perform poorly in phylogenetically divergent lineages or in organisms with atypical or reduced targeting…
Braden Charles DeMattei, Stephanie E. Hampton
Understanding species interactions is integral to understanding ecosystem function and predicting how disturbances may affect the services provided to society. Analysis of trophic interactions, however, requires a significant investment of time and resources. Using a simple predator-prey pairing of a semi-sessile…