4 papers · ranked by Valyu relevance
Azza E. Ahmed, Jacob Heldenbrand, Yan Asmann, Faisal M. Fadlelmola + 11 more
'Daniel S. Katz' 'Katherine Kendig' 'Matthew C. Kendzior' 'Tiffany Li' 'Yingxue Ren' 'Elliott Rodriguez' 'Matthew R. Weber' 'Justin M. Wozniak' 'Jennie Zermeno' 'Liudmila S. Mainzer' 'Li Chen'] Bioinformatics research is frequently performed using complex workflows with multiple steps, fans, merges, and conditionals.…
Fabio F. de Oliveira, Leonardo A. Dias, Marcelo A. C. Fernandes
In bioinformatics, alignment is an essential technique for finding similarities between biological sequences. Usually, the alignment is performed with the Smith-Waterman (SW) algorithm, a well-known sequence alignment technique of high-level precision based on dynamic programming. However, given the massive data volume…
Matija Korpar, Martin Šošić, Dino Blažeka, Mile Šikić
The deluge of next-generation sequencing (NGS) data and expanding database poses higher requirements for protein similarity search. State-of-the-art tools such as BLAST are not fast enough to cope with these requirements. Because of that it is necessary to create new algorithms that will be faster while keeping similar…
Kristiina Rahkema, Dietmar Pfahl, Rudolf Ramler, Daniel Graziotin
Adding dependencies to third-party libraries through package managers is a common practice in software development. The evolution of library dependency networks has been analyzed for many package managers. There are, however, no studies on how the library dependency networks of multiple package managers behave in the…