12 papers · ranked by Valyu relevance
Gang Mei, Nengxiong Xu, Liangliang Xu
This paper presents an efficient parallel Adaptive Inverse Distance Weighting (AIDW) interpolation algorithm on modern Graphics Processing Unit (GPU). The presented algorithm is an improvement of our previous GPU-accelerated AIDW algorithm by adopting fast k-nearest neighbors (kNN) search. In AIDW, it needs to find…
Xuan Zuo, Hui-Yan Li, Shan Gao, Pu Zhang + 2 more
Adaptive gradient algorithms have been successfully used in deep learning. Previous work reveals that adaptive gradient algorithms mainly borrow the moving average idea of heavy ball acceleration to estimate the first- and second-order moments of the gradient for accelerating convergence. However, Nesterov acceleration…
Michael Muehlebach, Michael I. Jordan
We exploit analogies between first-order algorithms for constrained optimization and non-smooth dynamical systems to design a new class of accelerated first-order algorithms for constrained optimization. Unlike Frank-Wolfe or projected gradients, these algorithms avoid optimization over the entire feasible set at each…
Xin Wang, Bin Zhang, Xu Cao, Fei Liu + 2 more
Fluorescence molecular tomography (FMT) with early-photons can improve the spatial resolution and fidelity of the reconstructed results. However, its computing scale is always large which limits its applications. In this paper, we introduced an acceleration strategy for the early-photon FMT with graphics processing…
Pranay Reddy Kommera, Vinay Ramakrishnaiah, Christine Sweeney, Jeffrey Donatelli + 1 more
'Jeffrey Donatelli' 'Petrus H. Zwart'] The paper presents efforts to accelerate the multitiered iterative phasing (MTIP) algorithm on contemporary graphics processing units (GPUs). Application portability is demonstrated by accelerating the MTIP algorithm on NVIDIA and AMD GPUs using a single codebase.
Authors not listed
Stochastic Simulation Algorithms (SSA) are a cornerstone in simulating Free Radical Polymerization (FRP) due to their accuracy and reliability. However, computational inefficiency remains a challenge for large-scale and complex polymerization systems. This work introduces a novel stochastic simulation algorithm…
Authors not listed
Modeling multimetallic systems efficiently enables faster prediction of desirable chemical properties and design of new materials. This work describes an initial implementation for performing multireference wave function method localized active space self-consistent field (LASSCF) calculations through the use of…
Steen Lysgaard, Paul C. Jennings, Jens Strabo Hummelshøj, Thomas Bligaard + 1 more
A machine learning (ML) model is trained on-the-fly as a computationally inexpensive energy predictor before analyzing how to augment convergence in Genetic Algorithm (GA)-based approaches by using the ML model as a surrogate. This leads to a machine learning accelerated genetic algorithm (MLaGA) combining robust…
Jonas Latt, Christophe Coreixas, Joël Beny, Fang-Bao Tian
We present a novel, hardware-agnostic implementation strategy for lattice Boltzmann (LB) simulations, which yields massive performance on homogeneous and heterogeneous many-core platforms. Based solely on C++17 Parallel Algorithms, our approach does not rely on any language extensions, external libraries…
Yann Garniron, Thomas Applencourt, Kevin Gasperich, Anouar Benali + 15 more
Quantum Package is an open-source programming environment for quantum chemistry specially designed for wave function methods. Its main goal is the development of determinant-driven selected configuration interaction (sCI) methods and multi-reference second-order perturbation theory (PT2). The determinant-driven…
Madushanka Manathunga, Hasan Metin Aktulga, Andreas W. Goetz, Kenneth M. Merz + 1 more
We have ported and optimized the GPU accelerated QUICK and AMBER based ab initio QM/MM implementation on AMD GPUs. This encompasses the entire Fock matrix build and force calculation in QUICK including one-electron integrals, two-electron repulsion integrals, exchange-correlation quadrature, and linear algebra…
Pier Paolo Poier, Louis Lagardère, Jean-Philip Piquemal
We propose a new strategy to solve the Tkatchenko-Scheffler Many-Body Dispersion (MBD) model’s equations. Our approach overcomes the original O(N**3) computational complexity that limits its applicability to large molecular systems within thecontext of O(N) Density Functional Theory (DFT). First, in order to generate…