8 papers · ranked by Valyu relevance
Antica Culina, Ilona van den Berg, Simon Evans, Alfredo Sánchez-Tójar
'Alfredo Sánchez-Tójar'] Access to analytical code is essential for transparent and reproducible research. We review the state of code availability in ecology using a random sample of 346 nonmolecular articles published between 2015 and 2019 under mandatory or encouraged code-sharing policies. Our results call for…
Nitesh Kumar Sharma, Ram Ayyala, Dhrithi Deshpande, Yesha Patel + 13 more
'Viorel Munteanu' 'Dumitru Ciorba' 'Viorel Bostan' 'Andrada Fiscutean' 'Mohammad Vahed' 'Aditya Sarkar' 'Ruiwei Guo' 'Andrew Moore' 'Nicholas Darci-Maher' 'Nicole Nogoy' 'Malak Abedalthagafi' 'Serghei Mangul' 'Harry Hochheiser'] Data-driven computational analysis is becoming increasingly important in biomedical…
Michael John Grayling, Graham Mark Wheeler
design Authors: Michael John Grayling, Graham Mark Wheeler Our search yielded 4123 articles across the 31 considered journals ([Supplementary Table 1]()). Of these, 3875 were excluded on the following grounds: Non-adaptive design methodology (3817); Not a complete peer-reviewed article (40); Not directly applied to…
Tom Pollard, Thomas Sounack, Catherine A. Gao, Leo Anthony Celi + 5 more
Introduction The Transparent Reporting of a multivariable prediction model of Individual Prognosis Or Diagnosis (TRIPOD) statement was published to improve the reporting and critical appraisal of prediction model studies for diagnosis and prognosis. This paper describes the processes and methods that will be used to…
Authors not listed
Scientific discovery relies on innovative software as much as experimental methods, especially in proteomics, where computational tools are essential for mass spectrometer setup, data analysis, and interpretation. Since the introduction of SEQUEST, proteomics software has grown into a complex ecosystem of algorithms…
Evan Russell, Andrew K. Hall, Conor McKaigney, Craig Goldie + 2 more
'Ingrid Harle' 'Marco L.A. Sivilotti'] Introduction Some patients with end-stage disease who may neither want nor benefit from aggressive resuscitation receive such treatment if they cannot communicate in an emergency. Timely access to patients’ current resuscitation wishes, or “code status,” should be a key metric of…
Authors not listed
Machine learning models are transforming data-driven research across scientific disciplines, yet their deployment as accessible and reliable web services remains a significant challenge. We introduce the NERDD framework, a scalable, maintainable, and secure microservices platform designed to support the sustainable…
Ruben Sanchez-Garcia, Dávid Havasi, Gergely Takács, Matthew C. Robinson + 3 more
Compound availability is a critical property for design prioritization across the drug discovery pipeline. Historically, and despite their multiple limitations, compound-oriented synthetic accessibility scores have been used as proxies for this problem. However, the size of the catalogues of commercially available…