14 papers · ranked by Valyu relevance
Berk Ekmekci, Charles E. McAnany, Cameron Mura, Francis Ouellette
Computing has revolutionized the biological sciences over the past several decades, such that virtually all contemporary research in molecular biology, biochemistry, and other biosciences utilizes computer programs. The computational advances have come on many fronts, spurred by fundamental developments in hardware…
Peng Zhang, Wenzhang Dou, Huaping Liu
Flowcharts have broad applications in the fields of software development, engineering design, and scientific experimentation. Current flowchart data structure is mainly based on the adjacency list, cross-linked list, and adjacency matrix of the graph structure. Such design originated from the fact that any two nodes…
Xusheng Zhao, Yunqing Rao, Peng Qi, Qianhang Lyu + 3 more
'Shoubo Yu' 'Lalit Chandra Saikia'] The rectangular packing problem has been extensively studied over the years due to its wide application in industry. However, most of the research efforts are devoted to positioning techniques of the rectangles for various problem variants, the efficient implementation of the packing…
Nawsher Khan, Ibrar Yaqoob, Ibrahim Abaker Targio Hashem, Zakira Inayat + 4 more
'Zakira Inayat' 'Waleed Kamaleldin Mahmoud Ali' 'Muhammad Alam' 'Muhammad Shiraz' 'Abdullah Gani'] Big Data has gained much attention from the academia and the IT industry. In the digital and computing world, information is generated and collected at a rate that rapidly exceeds the boundary range. Currently, over 2…
Juryon Paik, Junghyun Nam, Ung Mo Kim, Dongho Won
With the advances of wireless sensor networks, they yield massive volumes of disparate, dynamic and geographically-distributed and heterogeneous data. The data mining community has attempted to extract knowledge from the huge amount of data that they generate. However, previous mining work in WSNs has focused on…
Shuvendu K. Lahiri, Chao Wang, Claire Dross, Johannes Kanig
SPARK is both a deductive verification tool for the Ada language and the subset of Ada on which it operates. In this paper, we present a recent extension of the SPARK language and toolset to support pointers. This extension is based on an ownership policy inspired by Rust to enforce non-aliasing through a move…
Brinda Vallat, Yana Rose, Dennis W Piehl, Jose M Duarte + 22 more
The Protein Data Bank (PDB) archives 3D structures of macromolecules determined experimentally using various methods. It is jointly managed by the Worldwide Protein Data Bank (wwPDB) consortium. Research Collaboratory for Structural Bioinformatics (RCSB) PDB, the US data center for the PDB, provides streamlined access…
Yusuke Koizumi, Kohei Watabe, Kenji Nakagawa, Igor Kanovsky
We propose a method to accelerate a response of structured overlay networks by reducing the number of hops required to answer multi-queries. In the proposed method, by copying data items to the redundant storage spaces in other storages, a good data placement reflecting co-occurrence structures in the structured…
Danilo Silva, Monika Moir, Marcel Dunaiski, Natalia Blanco + 5 more
The world has faced massive data growth over the past three decades. Organizations that work with data must address big data management problems to make decisions and establish policies. While there is no consensus about the definition of big data, a good way to characterize it is according to the five V’s: volume…
Martin Werner
This paper provides an abstract analysis of parallel processing strategies for spatial and spatio-temporal data. It isolates aspects such as data locality and computational locality as well as redundancy and locally sequential access as central elements of parallel algorithm design for spatial data. Furthermore, the…
Maxim Kolomeets, Vasily Desnitsky, Igor Kotenko, Andrey Chechulin + 3 more
'Brij B. Gupta' 'Guangtao Zhai' 'Alicia García-Holgado'] Currently, the methods and means of human-machine interaction and visualization as its integral part are being increasingly developed. In various fields of scientific knowledge and technology, there is a need to find and select the most effective visualization…
Jacco van de Streek, Marcus A. Neumann
The accuracy of 215 experimental organic crystal structures from powder diffraction data is validated against a dispersion-corrected density functional theory method.
Arno Siebes
In this paper, I posit that from a research point of view, Data Science is a language. More precisely Data Science is doing Science using computer science as a language for datafied sciences; much as mathematics is the language of, e.g., physics. From this viewpoint, three (classes) of challenges for computer science…
Hyojung Ryu, Tae-Rae Kim, SeonJoo Ahn, Sunyoung Ji + 2 more
'Vladimir N. Uversky'] The refinement of low-quality structures is an important challenge in protein structure prediction. Many studies have been conducted on protein structure refinement; the refinement of structures derived from NMR spectroscopy has been especially intensively studied. In this study, we generated…