19 papers · ranked by Valyu relevance
Juhee Ko, Ukeob Park, Daekeun Kim, Seung Wan Kang
We describe the utility of a standardized index (Z-score) in quantitative EEG (QEEG) capable of when referenced to a resting-state, sex- and age-differentiated QEEG normative database (ISB-NormDB). Our ISB-NormDB comprises data for 1,289 subjects (553 males, 736 females) ages 4.5 to 81 years that met strict normative…
Yin-Chen Wu, I-Mei Lin, Andrew Chih Wei Huang
This study referred to the standard of electroencephalography (EEG) collection of normative databases and collected the Taiwan normative database to examine the reliability and validation of the Taiwan EEG normative database. We included 260 healthy participants and divided them into five groups in 10-year age-group…
Luis Filipe Nakayama, Lucas Zago Ribeiro, Juliana Angelica Estevão de Oliveira, João Carlos Ramos Gonçalves de Matos + 4 more
Purpose In supervised Machine Learning algorithms, labels and reports are important in model development. To provide a normality assessment, the OCT has an in-built normative database that provides a color base scale from the measurement database comparison. This article aims to evaluate and compare normative databases…
Jo, Eunjae, Lee, Nakyung + 2 more
Database normalization is crucial to preserving data integrity. However, it is time-consuming and error-prone, as it is typically performed manually by data engineers. To this end, we present Miffie, a database normalization framework that leverages the capability of large language models. Miffie enables automated data…
Mehner, Luise, Fiedler, Lena Alicija Philine + 4 more
The widespread application of Large Language Models (LLMs) involves ethical risks for users and societies. A prominent ethical risk of LLMs is the generation of unfair language output that reinforces or exacerbates harm for members of disadvantaged social groups through gender biases (Weidinger et al., 2022; Bender et…
Niko S. Snell, R. Lee
In modern databases, the practice of data normalization continues to be important in improving data integrity, minimizing redundancies, and eliminating anomalies. However, since its inception and consequent improvements, there have been no attempts to document a method which constrains the values of attributes capable…
Cody James Christopher, Kristen Moore, David Liebowitz
In this paper we introduce the SchemaDB data-set; a collection of relational database schemata in both sql and graph formats. Databases are not commonly shared publicly for reasons of privacy and security, so schemata are not available for study. Consequently, an understanding of database structures in the wild is…
Paul L. Soto
Data collection and analysis are central to scientific research, including in applied and basic behavior analysis. A substantial amount of attention has been given to how to rigorously collect and analyze data. Less attention has been paid to storing and maintaining research data, which becomes a critical step in the…
Ozeki Kentaro, Ando, Risako, Morishita Takanobu + 4 more
Normative reasoning is a type of reasoning that involves normative or deontic modality, such as obligation and permission. While large language models (LLMs) have demonstrated remarkable performance across various reasoning tasks, their ability to handle normative reasoning remains underexplored. In this paper, we…
Sebastian Duesing, Jason Bennett, James A. Overton, Randi Vita + 1 more
Using the ADP normalization toolkit, we normalized the age and data-location free-text datasets from the IEDB, two datasets with very different content and normalization needs, in such a way that renders the data in these datasets searchable, findable, and ontologizable in a way that they simply were not before.…
Venkata Chandrasekhar Nainala, Kohulan Rajan, Sri Ram Sagar Kanakam, Nisha Sharma + 3 more
The COCONUT (COlleCtion of Open Natural prodUcTs) database was launched in 2021 as an aggregation of openly available natural product datasets and has been one of the biggest open natural product databases since. Apart from the chemical structures of natural products, COCONUT contains information about names and…
Dhouha Grissa, Alexander Junge, Tudor I. Oprea, Lars Juhl Jensen
The scientific knowledge about which genes are involved in which diseases grows rapidly, which makes it difficult to keep up with new publications and genetics datasets. The DISEASES database aims to provide a comprehensive overview by systematically integrating and assigning confidence scores to evidence for…
Anne Etien, Nicolas Anquetil
Context: Relational databases play a central role in many information systems. Their schema contains structural (e.g. tables and columns) and behavioral (e.g. stored procedures or views) entity descriptions. Then, just like for "normal" software, changes in legislation, offered functionalities, or functional contexts…
Shahid Ullah, Wajeeha Rahman, Farhan Ullah, Gulzar Ahmad + 2 more
'Muhmmad Ijaz' 'Tianshun Gao'] Background: The achievement of the human genome project provides a basis for the systematic study of the human genome from evolutionary history to disease-specific medicine. With the explosive growth of biological data, a growing number of biological databases are being established to…
Anthony Shea, Shixiang Sun, Justin Kennedy, Lei Zhang + 2 more
Recent advances in ultra-accurate sequencing technologies have revealed that somatic mutations accumulate across the human lifespan and may contribute to both normal aging and disease. These mutations are highly diverse, often non-recurrent, and functionally heterogeneous, which makes their biological impact difficult…
Authors not listed
Mass spectrometry (MS) generates large datasets that are stored in increasingly optimized and complex file types, demanding technical expertise to extract information rapidly and easily. We wondered whether a simple structured query language (SQL) database could hold raw MS data and allow for easily readable queries…
Aleem Akhtar
—Databases are considered to be integral part of modern information systems. Almost every web or mobile application uses some kind of database. Database management systems are considered to be a crucial element from both business and technological standpoint. This paper divides different types of database management…
Shuya Ikeda, Zhaonan Zou, Hidemasa Bono, Yuki Moriya + 4 more
BioSample is a comprehensive repository of experimental sample metadata, playing a crucial role in providing a comprehensive archive and enabling experiment searches regardless of type. However, the difficulty in comprehensively defining the rules for describing metadata and limited user awareness of best practices for…
Ángel Gálvez-Merchán, Kyung Hoi (Joseph) Min, Lior Pachter, A. Sina Booeshaghi
We present a command-line tool, called ffq, for querying metadata from genomic databases.