13 papers · ranked by Valyu relevance
Bahman Arasteh, Seyed Salar Sefati, Huseyin Kusetogullari, Farzad Kiani + 3 more
Efficient task scheduling remains a key challenge in High-Performance Computing and Internet of Things (IoT) systems, where the sequential execution of nested loops often limits parallelism. This paper proposes a hybrid approach that dynamically parallelizes nested loops in heterogeneous IoT environments. The suggested…
Xuemei Geng, Yanwei Yang, Xuxin Dong, Xia Shou + 5 more
The standard meter water flow prover is widely used due to its mature technology and high work efficiency. However, the process of sending the standard meter for calibration is not only time-consuming and laborious but also introduces deviations due to differences in installation and operating conditions. Therefore, by…
Junya Nakanishi, Jun Baba, Yuichiro Yoshikawa, Hiroko Kamide + 1 more
This paper discusses the functional advantages of the Selection-Broadcast Cycle structure proposed by Global Workspace Theory (GWT), inspired by human consciousness, particularly focusing on its applicability to artificial intelligence and robotics in dynamic, real-time scenarios. While previous studies often examined…
Amir Hossein Salehi Shayegan
In this work, we present a solution to the critical limitation of qubit capacity in near-term quantum hardware by giving a hybrid framework that integrates the spectral element method (SEM) with distributed quantum computing. Using domain decomposition techniques, the additive and multiplicative Schwarz methods, the…
Andrew C. Powers, Yanapat Janthana, Parisa Hosseinzadeh
Cyclic peptides are a promising class of therapeutics due to their attractive drug qualities such as increased structural stability, cell permeability, and resistance to proteolytic degradation. With recent advancements in cyclic peptide backbone generation models like CyclicCAE and RFPeptide, generating cyclic peptide…
Minh Ngoc Ho, Jiayuan Miao, Yi Shan, Choi Yi Li + 3 more
Efficient Structure Prediction for Thioether-Linked Cyclic Peptides Authors: Minh Ngoc Ho, Jiayuan Miao, Yi Shan, Choi Yi Li, Hiroaki Suga, James D. Baleja, Yu-Shan Lin Cyclic peptides have gained interest as potential therapeutics due to their ability to target specific protein-protein interactions and be…
Beenish Gul, Maria Murach, Stefan Bekiranov, Kevin Skadron + 1 more
The GPU architecture is composed of a scalable array of Streaming Multiprocessors (SMs). Modern GPUs, for example, NVIDIA’s Ampere architecture, consists of 6912 CUDA cores (NVIDIA) sliced into 108 Streaming Processors. To parallelize Leiden on GPUs, all graph data arrays, including neighbors, community assignments…
Shichao Zhu, Mieradilijiang Abudupataer, Zheng Zuo, Yongxin Sun + 2 more
We developed a multi-channel and multilayered polydimethylsiloxane (PDMS) microfluidic platform that integrates cyclic mechanical stimulation, independent reagent delivery, and real-time optical observation within a single device. The platform employs a four-layer architecture comprising a pneumatic valve control…
Nomindari Bayaraa, Maxim Secor, Marc L. Descoteaux, Yu-Shan Lin
of Mixed-Chirality Cyclic Peptides via Diffusion Models Authors: Nomindari Bayaraa, Maxim Secor, Marc L. Descoteaux, Yu-Shan Lin Cyclic peptides are an emerging therapeutic modality, with recent computational efforts focusing on the design of cyclic peptides that predominantly adopt a single conformation. However, many…
Mateusz Gruzewski, Marek Palkowski, Ramon Antonio Rodriges Zalipynis
In this article, we present an efficient and concise OpenMP implementation of the Nussinov RNA folding algorithm, a well-known representative of non-serial polyadic dynamic programming (NPDP). Our goal is to develop an optimized implementation that can serve as a template for related dynamic programming applications.…
Mohammed Alaa Ala’anzy, Nurdaulet Tolendi, Baizhan Baubek, Abdulmohsen Algarni + 1 more
Sorting can be approached in two main ways: sequentially and in parallel. In sequential sorting, data is processed in a single-threaded manner, which can be slow for large datasets. However, parallel sorting divides the task across multiple processing units, enabling faster results by processing data simultaneously.…
Christoph Stelz, Lukas Hübner, Alexandros Stamatakis, Russell Schwartz
In Section 6.1, we evaluate the reproducibility of phylogenetic tree inferences on datasets from the TreeBASE () repository. For this, for each dataset, we execute the same RAxML-NG () application binary eight times, using identical hardware, search settings, and random seeds. For each of the eight runs we exclusively…
Kevin Garner, Chander Sadasivan, Nikos Chrisochoides
This paper presents two performance optimization techniques for a mesh adaptation method that is designed to help streamline the discretization of complex vascular geometries within the numerical modeling process. This method is integrated into a pipeline with an image-to-mesh conversion tool to generate adaptive…