11 papers · ranked by Valyu relevance
Lesia Mochurad, Andrii Sydor, Oleh Ratinskiy
Introduction Streaming services are highly popular today. Millions of people watch live streams or videos and listen to music. Methods One of the most popular streaming platforms is Twitch, and data from this type of service can be a good example for applying the parallel DBSCAN algorithm proposed in this paper. Unlike…
Zeyu Xia, Canqun Yang, Chenchen Peng, Yifei Guo + 3 more
'Tao Tang' 'Yingbo Cui'] Background The advent of Single Molecule Real-Time (SMRT) sequencing has overcome many limitations of second-generation sequencing, such as limited read lengths, PCR amplification biases. However, longer reads increase data volume exponentially and high error rates make many existing alignment…
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Protein conformational landscapes contain the functionally relevant information useful for understanding biological processes. Mapping out conformational landscapes provides valuable insights into protein behaviors and biological phenomena, and has relevance to therapeutic design. While experimental structural biology…
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Recent advances in machine learning force fields (MLFF) have significantly extended the reach of atomistic simulations. Continuous progress in this field requires reliable reference datasets, accurate MLFF architectures, and efficient active learning strategies to enable robust modeling of complex molecular and…
Elias Elmquist, Kajetan Enge, Alexander Rind, Carlo Navarra + 6 more
'Robert Höldrich' 'Michael Iber' 'Alexander Bock' 'Anders Ynnerman' 'Wolfgang Aigner' 'Niklas Rönnberg'] One of the commonly used visualization techniques for multivariate data is the parallel coordinates plot. It provides users with a visual overview of multivariate data and the possibility to interactively explore…
Cristian Vidal-Silva, Vannessa Duarte, Jesennia Cárdenas-Cobo, Iván Veas
Parallel computing is a current algorithmic approach to looking for efficient solutions; that is, to define a set of processes in charge of performing at the same time the same task. Advances in hardware permit the massification of accessibility to and applications of parallel computing. Nonetheless, some algorithms…
Kecong Tang, Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Durbin’s positional Burrows-Wheeler transform (PBWT) enables algorithms with the optimal time complexity of $OMN$ for reporting all vs all haplotype matches in a population panel with $M$ haplotypes and $N$ variant sites. However, even this efficiency may still be too slow when the number of haplotypes reaches…
Peiyu Zong, Wenpeng Deng, Jian Liu, Jue Ruan
Farrar recommends employing a stripe method to enhance the implementation of in-sequence parallelism, resulting in significant improvements in parallel performance through the utilization of the SIMD instruction set. This method involves reorganizing the originally sequential computation. The length of each stripe…
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As demand rises for scalable and sustainable energy storage, fast and low-cost diagnostics capable of identifying cell-to-cell variations are urgently needed, particularly for factory-produced sorting and second-life assessment. Electrochemical impedance spectroscopy (EIS) is widely used but remains slow, expensive and…
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Background: Pharmaceutical batch scheduling in multi-reactor configurations presents complex optimization challenges under operational uncertainty, yet limited research addresses how parallel processing capacity affects heuristic performance and predictive modeling. Objectives: This study investigated scheduling…
Andrew Simmonett, Bernard Brooks, Thomas Darden
Evaluation of noncovalent electrostatic interactions is the dominant bottleneck in classical molecular dynamics simulations, and evaluation of Coulombic matrix elements similarly limits quantum mechanical self consistent field calculations. These difficulties are a result of the Coulomb operator’s slow decay, which…