13 papers · ranked by Valyu relevance
Ruiqin Bai, Xiaopeng Zhang, Xiaoyu Lv, Antonio Lázaro
As RFID systems become increasingly widespread, the limitations imposed by tag collisions on system performance are becoming more evident. Parallel decoding has attracted significant attention due to its ability to improve channel utilization and throughput. However, existing schemes often perform poorly when decoding…
G. Kandemir, D. H. Duncan, D. van Moorselaar, J. Theeuwes
For almost half a century, target-distractor similarity has been known to induce different visual search modes. When a target is highly salient, it can pop out, suggesting parallel processing of all items irrespective of set size. By contrast, high similarity among items requires item-by-item comparison with an…
Kimonas Provatas, Aris Karatzikos, Charalampos Koilakos, Michail Patsakis + 5 more
Genomic and protein foundation models (GFMs and PFMs) have demonstrated strong performance in learning the language of DNA and proteins, but their use in large-scale sequence generation is limited by the latency of autoregressive decoding. Because every token triggers a forward pass of a large Transformer, whose…
Kimonas Provatas, Aris Karatzikos, Charalampos Koilakos, Michail Patsakis + 5 more
Genomic and protein foundation models (GFMs and PFMs) have demonstrated strong performance in learning the language of DNA and proteins, but their use in large-scale sequence generation is limited by the latency of autoregressive decoding. Because every token triggers a forward pass of a large Transformer, whose…
Ramy Khabbaz, Jérémy Mateos, Marc Antonini, Serge Kas Hanna
The biochemical processes underlying DNA data storage, including synthesis, amplification, and sequencing, are inherently noisy. Consequently, base-level insertion, deletion, and substitution (IDS) errors, as well as sequence-level dropouts, occur and pose major challenges for reliable data retrieval. Here we introduce…
Rob Patro, Siddhant Bharti, Prajwal Singhania, Rakrish Dhakal + 2 more
The FASTQ file format is the lingua franca of primary data distribution and processing across most of bioinformatics. Over time, the compression, storage, transmission, and decompression of gzip compressed fastq.gz files has become a substantial scalability bottleneck in the modern world of fast and massively parallel…
Fernando Martínez-García, Francisco Revson F. Pereira, Pedro Parrado-Rodríguez, Yauhen Yakimenka + 1 more
The development and use of large-scale quantum computers relies on integrating quantum error-correcting (QEC) schemes into the quantum computing pipeline. A fundamental part of the QEC protocol is the decoding of the syndrome to identify a recovery operation with a high success rate. In this work, we implement a…
Wenbo Shi, Wenlong Xie, Jiashen Hu, Lishan Liu + 1 more
Future wireless networks require channel coding schemes that can provide high reliability, low latency, and strong adaptability under finite-blocklength and structurally heterogeneous transmission scenarios. Globally coupled low-density parity-check (GC-LDPC) codes are promising for such systems because their coupled…
Xinlei Chen, Geng Chai, Lei Wang, Sijie Wang + 2 more
Continuous-variable quantum secure communication encoded by Gaussian mapping offers high-capacity and high transmission rates. For the theoretically secure encryption scheme of a 1-time pad, a highly reliable coherent-state quantum secure communication system has been established, and its security has been…
Jinyang Wang, Zhugang Wang, Di Liu, Isabelle Ledoux-Rak
Ultra-high sampling rates in coherent optical front-ends increasingly exceed the processing capabilities of real-time baseband processors, creating a bottleneck in coherent free-space optical communication systems. We propose a unified state-space framework to systematically parallelize digital signal processing (DSP)…
Hao Ding, Nannan Wu, Tianyi Qiu
DNA foundation models such as Evo2 7B adopt hybrid Hyena/attention architectures (Striped-Hyena2) whose single-stream autoregressive decoding is bounded by weight bandwidth at ∼45 tok/s. Speculative decoding on such hybrids faces a systems problem that prior SSM work solves only partially: after a draft is verified…
Drew E. Winters
Studying flexible, adaptive transitions between cognitive tasks and serial-parallel processing under changing task demands has been a central focus for understanding human cognition. Advances in neuroimaging analysis have improved the ability to link cognition with brain function, providing a foundation for developing…
Kuilian Yang, Ahmed M. Eltawil, Khaled Nabil Salama
Streaming spiking neural network (SNN) accelerators are widely adopted on edge platforms for their deterministic, low-latency inference. Realizing their full efficiency, however, requires three properties to hold simultaneously: a router-free streaming dataflow, joint exploitation of temporal and spatial sparsity…