25 papers · ranked by Valyu relevance
Jose L Figueroa, Richard Allen White
We now exist in the era of massive datasets from genomics, large language models, and all the known knowledge of humanity right at our fingertips. Much of this data is becoming more accessible; however, processing such data remains an ongoing issue across systems including high performance computing (HPC)…
Haymo Kutschbach
This work introduces a self-optimizing virtual processor (VP) for numerical array programs that shifts parallelization from a manual developer task to a cooperative, agent-like runtime mechanism. Instead of relying on centralized task-graph scheduling, static compiler optimization, or explicitly annotated parallel…
Authors not listed
Recent advances in machine learning force fields (MLFF) have significantly extended the reach of atomistic simulations. Continuous progress in this field requires reliable reference datasets, accurate MLFF architectures, and efficient active learning strategies to enable robust modeling of complex molecular and…
Mohammed Alaa Ala’anzy, Nurdaulet Tolendi, Baizhan Baubek, Abdulmohsen Algarni + 1 more
Sorting can be approached in two main ways: sequentially and in parallel. In sequential sorting, data is processed in a single-threaded manner, which can be slow for large datasets. However, parallel sorting divides the task across multiple processing units, enabling faster results by processing data simultaneously.…
Stavrinides, Georgios L., Karatza, Helen D.
With the explosive growth of big data, workloads tend to get more complex and computationally demanding. Such applications are processed on distributed interconnected resources that are becoming larger in scale and computational capacity. Data-intensive applications may have different degrees of parallelism and must…
Jinyang Wang, Zhugang Wang, Di Liu, Isabelle Ledoux-Rak
Ultra-high sampling rates in coherent optical front-ends increasingly exceed the processing capabilities of real-time baseband processors, creating a bottleneck in coherent free-space optical communication systems. We propose a unified state-space framework to systematically parallelize digital signal processing (DSP)…
Ge Zhang
bcftools is the standard toolkit for handling VCF and BCF variant files, but it processes records on a single core; its --threads option speeds up only compression of the output, not the work done on variant records. Processing large call sets is therefore slow, and users often divide the genome and reassemble the…
G. Kandemir, D. H. Duncan, D. van Moorselaar, J. Theeuwes
For almost half a century, target-distractor similarity has been known to induce different visual search modes. When a target is highly salient, it can pop out, suggesting parallel processing of all items irrespective of set size. By contrast, high similarity among items requires item-by-item comparison with an…
Tasmia Jannat, Michael Gowanlock, Satish Puri
The growing volume of data in scientific domains has made spatial query processing increasingly challenging due to high data transfer costs across the memory hierarchy and limited memory bandwidth. To address these bottlenecks and reduce the energy consumed on data movement, this work explores Processing-in-Memory…
Ran Ginosar
I have greatly enjoyed spending many years in studying parallel computing. My journey goes thorough MP-C, PLURAL, Async Plural, HAL, RC64 and more. As a PhD student at Princeton I studied a combination of shared memory and message passing, motivated by algorithms and the ease of programming. While at the Technion, a…
Kenshin Obi, Ryo Yoshinaka, Fujimoto, Hiroshi + 1 more
—In recent years, the complexity and scale of embedded systems, especially in the rapidly developing field of autonomous driving systems, have increased significantly. This has led to the adoption of software and hardware approaches such as Robot Operating System (ROS) 2 and multi-core processors. Traditional manual…
Bahman Arasteh, Seyed Salar Sefati, Huseyin Kusetogullari, Farzad Kiani + 3 more
Efficient task scheduling remains a key challenge in High-Performance Computing and Internet of Things (IoT) systems, where the sequential execution of nested loops often limits parallelism. This paper proposes a hybrid approach that dynamically parallelizes nested loops in heterogeneous IoT environments. The suggested…
Drew E. Winters
Studying flexible, adaptive transitions between cognitive tasks and serial-parallel processing under changing task demands has been a central focus for understanding human cognition. Advances in neuroimaging analysis have improved the ability to link cognition with brain function, providing a foundation for developing…
Farzad Razi, Mehran Moghadam, Sercan Aygun, M. Hassan Najafi + 1 more
Today's high-performance architectures are increasingly constrained by data movement latency and energy overhead, as the slowdown of single-core performance scaling coincides with the rise of highly data-intensive workloads. In-memory architectures have emerged as a complementary solution to conventional von Neumann…
Authors not listed
Free radical copolymerization, a crucial industrial technique for synthesizing copolymers from a diverse array of monomers with ease, has played a significant role in advancing human society. However, the journey from small-scale research and development to manufacturing has been hindered by a lack of research into…
Shujun Peng, Xinhan Lin, Yu Zhang, Yuheng Xiao + 1 more
Parallel scan is a fundamental primitive widely used in a broad range of workloads, including parallel sorting, graph algorithms, and sampling in large language model inference. Although GPU-optimized parallel scan algorithms have been extensively studied, their reliance on vector units makes them inefficient on modern…
Rob Patro, Siddhant Bharti, Prajwal Singhania, Rakrish Dhakal + 2 more
The FASTQ file format is the lingua franca of primary data distribution and processing across most of bioinformatics. Over time, the compression, storage, transmission, and decompression of gzip compressed fastq.gz files has become a substantial scalability bottleneck in the modern world of fast and massively parallel…
Drew E. Winters
Studying flexible, adaptive transitions between cognitive tasks and serial-parallel processing under changing task demands has been a central focus for understanding human cognition. Advances in neuroimaging analysis have improved the ability to link cognition with brain function, providing a foundation for developing…
Rubén Langarita, Jesús Alastruey-Benedé, Pablo Ibáñez, Santiago Marco‐Sola + 2 more
—Multiple HPC applications are often bottlenecked by compute-intensive kernels implementing complex dependency patterns (data-dependency bound). Traditional general-purpose accelerators struggle to effectively exploit fine-grain parallelism due to limitations in implementing convoluted data-dependency patterns (like…
Authors not listed
Background: Pharmaceutical batch scheduling in multi-reactor configurations presents complex optimization challenges under operational uncertainty, yet limited research addresses how parallel processing capacity affects heuristic performance and predictive modeling. Objectives: This study investigated scheduling…
Drew E. Winters
Studying flexible, adaptive transitions between cognitive tasks and serial-parallel processing under changing task demands has been central to understanding human cognition. Advances in neuroimaging analysis have improved the ability to link cognition with brain function, motivating methods that characterize dynamic…
Noam Teyssier, Alexander Dobin
Single-cell genomics is rapidly scaling toward billion-cell atlases, but computational analysis has become a critical bottleneck. Processing multiplexed datasets with existing tools requires substantial computational resources and runtime that become prohibitive at scale. Here we present cyto, an ultra highthroughput…
Authors not listed
This comprehensive review examines the evolution of autonomous materials synthesis laboratories that integrate artificial intelligence with advanced robotics to accelerate discovery. Traditional materials development pipelines typically require 10-20 years, but self-driving laboratories (SDLs) and Materials…
Authors not listed
Machine olfaction—the artificial replication of the sense of smell—faces significant challenges due to the absence of large, standardized training datasets. Unlike vision, language, and audio models, which benefit from extensive corpora such as ImageNet, GLUE, and AudioSet, olfaction lacks scaled equivalents and…
Authors not listed
Background: Pharmaceutical batch production faces significant scheduling challenges due to operational uncertainties including equipment failures, yield variability, and demand fluctuations. While scheduling heuristics are widely used in practice, their comparative performance under varying uncertainty conditions…