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17 papers · ranked by Valyu relevance

01
BbioRxiv2 Feb 2026
Optimality with room to vary: stiff and sloppy modes in a sensory population
Kyle Bojanek, Olivier Marre, Stephanie E. Palmer
Populations of sensory neurons are thought to be shaped by selective pressures for optimal information transmission, yet real neural circuits display substantial variability across stimulus repeats, across time, and between individuals. Reconciling this variability with normative theories requires understanding not…
77relevance
02
BbioRxiv11 Nov 2025
Parsing auditory neural code into maximum-entropy packets
Huanqiu Zhang, Israel Nelken, Tatyana Sharpee
Deciphering the neural code requires identifying its fundamental symbols or code-words. Neural activity is usually interpreted either as a rate code – based on average spike counts – or as a temporal code, which distinguishes patterns with identical counts. Yet, the symbols of the code remain undefined. Here we show…
75relevance
03
PPubMed12 Jan 2026
Near-Optimal Decoding Algorithm for Color Codes Using Population Annealing
Fernando Martínez-García, Francisco Revson F. Pereira, Pedro Parrado-Rodríguez, Yauhen Yakimenka + 1 more
The development and use of large-scale quantum computers relies on integrating quantum error-correcting (QEC) schemes into the quantum computing pipeline. A fundamental part of the QEC protocol is the decoding of the syndrome to identify a recovery operation with a high success rate. In this work, we implement a…
66relevance
04
PPubMed21 Nov 2025
Bayesian Model Averaging of Parametric Coalescent Models for Phylodynamic Inference
Yuan Xu, Kylie Chen, Dong Xie, Alexei J Drummond + 1 more
Bayesian phylodynamic models have become essential for reconstructing population history from genetic data, yet their accuracy depends crucially on choosing appropriate demographic models. To address uncertainty in model choice, we introduce a Bayesian model averaging (BMA) framework that integrates multiple parametric…
65relevance
05
BbioRxiv10 Feb 2026
A stable, hierarchical LIN code system for *Campylobacter jejuni* and *Campylobacter coli:* A unified genomic nomenclature for lineage-level typing and global surveillance
Kasia M. Parfitt, Ben Pascoe, Keith A. Jolley, Amy Douglas + 4 more
Campylobacter remains the leading cause of bacterial gastroenteritis worldwide, with C. jejuni accounting for around 90% of infection and C. coli accounting for most of the rest. Seven-locus multilocus sequence typing (MLST) has improved our understanding of host association and population structure, whilst core genome…
65relevance
06
BbioRxiv9 Jan 2026
ABC_GP_IPM:A Python package for applying GP and ABC to Integral Projection Models, with a Soay sheep case study
Zhixiao Zhu, Maria D. Christodoulou, David Steinsaltz
The integration of Gaussian Process (GP) models with Approximate Bayesian Com-putation (ABC) has been explored as a flexible framework for constructing Integral Projection Models (IPMs), enabling non-parametric modelling of demographic rela-tionships and the incorporation of population-level information without…
62relevance
07
PPubMed31 Dec 2025
<i> Neisseria gonorrhoeae </i> LIN codes provide a robust, multi-resolution lineage nomenclature
Anastasia Unitt, Made A Krisna, Kasia M Parfitt, Keith A Jolley + 4 more
Investigation of the bacterial pathogen Neisseria gonorrhoeae is complicated by extensive horizontal gene transfer: a process which disrupts phylogenetic signals and impedes our understanding of population structure. The ability to consistently identify N. gonorrhoeae lineages is important for surveillance of this…
62relevance
08
PPubMed30 Jun 2026
Pregnancy-Related Clinical Codes in Unlikely Populations in Primary Care
Helen Curtis, Peter Inglesby, Ben Goldacre, Rose Higgins + 4 more
We discovered that the official list of clinical codes for pregnancy during the COVID-19 pandemic identified some unlikely pregnancies (for example, in older men), principally due to a code describing a specific fetal position (“knee presentation”), which notably lacks “fetal” in the code description. This is an…
60relevance
09
AarXiv14 Oct 2025
Large cities lose their growth advantage as countries urbanize
Andrea Musso, Diego Rybski, Dirk Helbing, Frank Neffke
The share of the world population living in cities with more than one million people rose from 11% in 1975 to 24% in 2025 (our estimates). Will this trend towards greater concentration in large cities continue or level off? We introduce two new city population datasets that use consistent city definitions across…
60relevance
10
CchemRxiv19 Nov 2025
A General Pythonic Framework for DFT-in-DFT and WF-in-DFT Embedding
Authors not listed
High-level quantum mechanical (QM) simulations provide accurate electronic information of chemical systems but scale unfavourably with system size, making calculations of applied systems challenging. Hierarchical quantum mechanics in quantum mechanics embedding (QM/QM) addresses this issue by localising the highly…
60relevance
11
AarXiv28 Oct 2025
Streamlining business functions in official statistical production with Machine Learning
Barragan, Sandra, Pérez-Bote, Adrián + 6 more
We provide a description of pilot and production experiences to streamline some business functions in the official statistical production process using statistical learning models. Our approach is quality-oriented searching for an improvement on accuracy, cost-efficiency, timeliness, granularity, response burden…
58relevance
12
AarXiv1 Jun 2026
Evolutionary Discovery of Bivariate Bicycle Codes with LLM-Guided Search
Juan Cruz-Benito, Andrew W. Cross, David Kremer, Ismael Faro
Quantum LDPC code discovery requires searching large algebraic design spaces while reliably certifying the parameters and equivalence classes of any candidates found. We introduce an LLM-guided evolutionary workflow in which language models mutate Python programs that generate bivariate-bicycle and perturbed…
57relevance
13
PPubMed12 Jun 2026
Using clinical notes to identify children with speech-language delay and understand differences in diagnostic timing
Jiang Shu, Danai Kasambira Fannin, Geraldine Dawson, Gary Maslow + 3 more
We next applied the learned classification model to the population-based classification task. Using just the clinical notes, we classified any encounter as speech-language delay whenever the model-predicted probability of speech-language delay was greater than 90%. This high threshold was selected to prioritize…
57relevance
14
PPubMed29 Apr 2026
Criterion validity and divergent risk profiles of long-term opioid therapy across medicare and medicaid Opioid adverse events in medicare and medicaid
Robert W. Hurley, Daniel Guth, Elaine L. Hill, Meredith C. B. Adams + 1 more
The low sensitivity and high specificity pattern indicate that Z79.891 functions as a confirmatory code: its presence signals clinician recognition of LTOT, but its absence does not exclude LTOT. This is consistent with the dependence on clinician documentation behavior rather than objective measurement. Notably, PPV…
56relevance
15
PPubMed10 Feb 2026
Protocol for development of a reporting guideline (TRIPOD-Code) for code repositories associated with diagnostic and prognostic prediction model studies
Tom Pollard, Thomas Sounack, Catherine A. Gao, Leo Anthony Celi + 5 more
Introduction The Transparent Reporting of a multivariable prediction model of Individual Prognosis Or Diagnosis (TRIPOD) statement was published to improve the reporting and critical appraisal of prediction model studies for diagnosis and prognosis. This paper describes the processes and methods that will be used to…
55relevance
16
CchemRxiv12 Dec 2025
A Census Tract-Level Modeling Framework for Estimation of Health Co-Benefits of Decarbonization in New York State
Authors not listed
Tools quantifying co-pollutant and public health benefits of decarbonization policies typically have coarse resolution, limiting understanding of local impacts and underestimating benefits. We present the New York Community-Scale Health and Air Pollution Policy Analysis tool, a new high resolution modeling framework to…
52relevance
17
AarXiv5 May 2026
Geographic Variation in Stack Overflow Code Quality: Evidence from a Cross-Regional Study of Coding Practices
Elijah Zolduoarrati, Sherlock A. Licorish, Nigel Stanger
Developers frequently reuse Stack Overflow code snippets, yet the quality of these snippets remains unevenly understood, particularly across programming languages and geographic contexts. This study investigates code quality in Stack Overflow answers from contributors located in the United States, focusing on SQL…
51relevance

Results for population code

Optimality with room to vary: stiff and sloppy modes in a sensory population

Parsing auditory neural code into maximum-entropy packets

Near-Optimal Decoding Algorithm for Color Codes Using Population Annealing

Bayesian Model Averaging of Parametric Coalescent Models for Phylodynamic Inference

A stable, hierarchical LIN code system for Campylobacter jejuni and Campylobacter coli: A unified genomic nomenclature for lineage-level typing and global surveillance

ABC_GP_IPM:A Python package for applying GP and ABC to Integral Projection Models, with a Soay sheep case study

<i> Neisseria gonorrhoeae </i> LIN codes provide a robust, multi-resolution lineage nomenclature

Pregnancy-Related Clinical Codes in Unlikely Populations in Primary Care

Large cities lose their growth advantage as countries urbanize

A General Pythonic Framework for DFT-in-DFT and WF-in-DFT Embedding

Streamlining business functions in official statistical production with Machine Learning

Evolutionary Discovery of Bivariate Bicycle Codes with LLM-Guided Search

Using clinical notes to identify children with speech-language delay and understand differences in diagnostic timing

Criterion validity and divergent risk profiles of long-term opioid therapy across medicare and medicaid Opioid adverse events in medicare and medicaid

Protocol for development of a reporting guideline (TRIPOD-Code) for code repositories associated with diagnostic and prognostic prediction model studies

A Census Tract-Level Modeling Framework for Estimation of Health Co-Benefits of Decarbonization in New York State

Geographic Variation in Stack Overflow Code Quality: Evidence from a Cross-Regional Study of Coding Practices

Optimality with room to vary: stiff and sloppy modes in a sensory population

Parsing auditory neural code into maximum-entropy packets

Near-Optimal Decoding Algorithm for Color Codes Using Population Annealing

Bayesian Model Averaging of Parametric Coalescent Models for Phylodynamic Inference

A stable, hierarchical LIN code system for Campylobacter jejuni and Campylobacter coli: A unified genomic nomenclature for lineage-level typing and global surveillance

ABC_GP_IPM:A Python package for applying GP and ABC to Integral Projection Models, with a Soay sheep case study

<i> Neisseria gonorrhoeae </i> LIN codes provide a robust, multi-resolution lineage nomenclature

Pregnancy-Related Clinical Codes in Unlikely Populations in Primary Care

Large cities lose their growth advantage as countries urbanize

A General Pythonic Framework for DFT-in-DFT and WF-in-DFT Embedding

Streamlining business functions in official statistical production with Machine Learning

Evolutionary Discovery of Bivariate Bicycle Codes with LLM-Guided Search

Using clinical notes to identify children with speech-language delay and understand differences in diagnostic timing

Criterion validity and divergent risk profiles of long-term opioid therapy across medicare and medicaid Opioid adverse events in medicare and medicaid

Protocol for development of a reporting guideline (TRIPOD-Code) for code repositories associated with diagnostic and prognostic prediction model studies

A Census Tract-Level Modeling Framework for Estimation of Health Co-Benefits of Decarbonization in New York State

Geographic Variation in Stack Overflow Code Quality: Evidence from a Cross-Regional Study of Coding Practices

Results for population code

Optimality with room to vary: stiff and sloppy modes in a sensory population

Parsing auditory neural code into maximum-entropy packets

Near-Optimal Decoding Algorithm for Color Codes Using Population Annealing

Bayesian Model Averaging of Parametric Coalescent Models for Phylodynamic Inference

A stable, hierarchical LIN code system for *Campylobacter jejuni* and *Campylobacter coli:* A unified genomic nomenclature for lineage-level typing and global surveillance

ABC_GP_IPM:A Python package for applying GP and ABC to Integral Projection Models, with a Soay sheep case study

<i> Neisseria gonorrhoeae </i> LIN codes provide a robust, multi-resolution lineage nomenclature

Pregnancy-Related Clinical Codes in Unlikely Populations in Primary Care

Large cities lose their growth advantage as countries urbanize

A General Pythonic Framework for DFT-in-DFT and WF-in-DFT Embedding

Streamlining business functions in official statistical production with Machine Learning

Evolutionary Discovery of Bivariate Bicycle Codes with LLM-Guided Search

Using clinical notes to identify children with speech-language delay and understand differences in diagnostic timing

Criterion validity and divergent risk profiles of long-term opioid therapy across medicare and medicaid Opioid adverse events in medicare and medicaid

Protocol for development of a reporting guideline (TRIPOD-Code) for code repositories associated with diagnostic and prognostic prediction model studies

A Census Tract-Level Modeling Framework for Estimation of Health Co-Benefits of Decarbonization in New York State

Geographic Variation in Stack Overflow Code Quality: Evidence from a Cross-Regional Study of Coding Practices

Optimality with room to vary: stiff and sloppy modes in a sensory population

Parsing auditory neural code into maximum-entropy packets

Near-Optimal Decoding Algorithm for Color Codes Using Population Annealing

Bayesian Model Averaging of Parametric Coalescent Models for Phylodynamic Inference

A stable, hierarchical LIN code system for *Campylobacter jejuni* and *Campylobacter coli:* A unified genomic nomenclature for lineage-level typing and global surveillance

ABC_GP_IPM:A Python package for applying GP and ABC to Integral Projection Models, with a Soay sheep case study

<i> Neisseria gonorrhoeae </i> LIN codes provide a robust, multi-resolution lineage nomenclature

Pregnancy-Related Clinical Codes in Unlikely Populations in Primary Care

Large cities lose their growth advantage as countries urbanize

A General Pythonic Framework for DFT-in-DFT and WF-in-DFT Embedding

Streamlining business functions in official statistical production with Machine Learning

Evolutionary Discovery of Bivariate Bicycle Codes with LLM-Guided Search

Using clinical notes to identify children with speech-language delay and understand differences in diagnostic timing

Criterion validity and divergent risk profiles of long-term opioid therapy across medicare and medicaid Opioid adverse events in medicare and medicaid

Protocol for development of a reporting guideline (TRIPOD-Code) for code repositories associated with diagnostic and prognostic prediction model studies

A Census Tract-Level Modeling Framework for Estimation of Health Co-Benefits of Decarbonization in New York State

Geographic Variation in Stack Overflow Code Quality: Evidence from a Cross-Regional Study of Coding Practices

A stable, hierarchical LIN code system for Campylobacter jejuni and Campylobacter coli: A unified genomic nomenclature for lineage-level typing and global surveillance

A stable, hierarchical LIN code system for Campylobacter jejuni and Campylobacter coli: A unified genomic nomenclature for lineage-level typing and global surveillance