26 papers · ranked by Valyu relevance
Rastko Ciric, Anna Xu, Russell A. Poldrack
Visualisations facilitate the interpretation of geometrically structured data and results. However, heterogeneous geometries—such as volumes, surfaces, and networks—have traditionally mandated different software approaches. We introduce hyve, a Python library that uses a compositional functional framework to enable…
Hiruna Samarakoon, Kisaru Liyanage, James M. Ferguson, Sri Parameswaran + 2 more
Nanopore sequencing measures ionic current during the translocation of DNA, RNA or protein molecules through a nanoscale protein pore. This raw current signal data can be ‘basecalled’ into sequence information and has the potential to identify other diverse molecular features, such as base modifications, secondary…
Aoyu Wu, Wai Tong, Haotian Li, Dominik Moritz + 2 more
'Huamin Qu'] Data visualizations are created and shared on the web at an unprecedented speed, raising new needs and questions for processing and analyzing visualizations after they have been generated and digitized. However, existing formalisms focus on operating on a single visualization instead of multiple…
Sabrina Jaeger-Honz, Christiane Rohse, Beat Ehrmann, Karsten Klein + 5 more
Molecular Dynamics (MD) simulations provide valuable insights into the behaviour of biomolecules, particularly in complex systems such as cellular membranes. However, the increasing volume of MD data presents significant challenges in data visualisation, exploration and analysis. We present MeTrEx (Membrane Trajectory…
Rafał Kaźmierczak, Agnieszka Szczepańska
Spatial planning and development use various visualisation methods. Technological advancements in visualisation techniques have allowed imaging to shift from 2 to 3D dimensions. 3D optical illusion, which converts information recorded in the digital form into a three-dimensional presentation, can be a new tool for…
Ari Kouts, Lonni Besançon, Michael Sedlmair, Benjamin Lee
As hallucinations are experienced by people in the real world, it makes sense to also view LSDvis in the context of the real world hence, situated visualisation. Situated visualisation was first coined by White and Feiner to mean "a visualisation that is related to and displayed in its environment." Willett et al.…
Murat Cihan Sorkun, Dajt Mullaj, J. M. Vianney A. Koelman, Süleyman Er
Visualizing chemical spaces streamlines the analysis of molecular datasets by reducing the information to human perception level, hence it forms an integral piece of molecular engineering, including chemical library design, high-throughput screening, diversity analysis, and outlier detection. We present here ChemPlot…
Silke Schwandt, Christian Wachter
Visualizations are ubiquitous in data-driven research, serving as both tools for knowledge production and genuine means of knowledge communication. Despite criticisms targeting the alleged objectivity of visualizations in the digital humanities (DH) and reflections on how they may serve as representations of both…
James Jackson, Panagiotis D. Ritsos, Peter Butcher, Jonathan C. Roberts
Visualisations Authors: James Jackson, Panagiotis D. Ritsos, Peter Butcher, Jonathan C. Roberts Title: Path-based Design Model for Constructing and Exploring Alternative Visualisations Authors: James Jackson, Panagiotis D. Ritsos, Peter Butcher, Jonathan C. Roberts Content: of star glyphs. Other researchers have…
Budi Permana, Patrick N. A. Harris, Leah W. Roberts, Thom Cuddihy + 3 more
Existing tools for phylogeographic and epidemiological visualisation primarily provide a macro-geographic view of epidemic and pandemic transmission events but offer little support for detailed investigation of outbreaks in healthcare settings. Here, we present HAIviz, an interactive web-based application designed for…
Emily South, Mark Rodgers
Background Scoping reviews and evidence maps are forms of evidence synthesis that aim to map the available literature on a topic and are well-suited to visual presentation of results. A range of data visualisation methods and interactive data visualisation tools exist that may make scoping reviews more useful to…
David Meijer, Marnix H. Medema, Justin J. J. van der Hooft
Effective visualization of small molecules is paramount in conveying concepts and results in cheminformatics. Scalable vector graphics (SVG) are preferred for creating such visualizations, as SVGs can be easily altered in post-production and exported to other formats. A wide spectrum of software applications already…
Fernanda I. Saldívar-González, José L. Medina-Franco
Chemical space is a powerful, general, and practical conceptual framework in drug discovery and other areas in chemistry that addresses the diversity of molecules and it has various applications. Moreover, chemical space is a cornerstone of chemoinformatics as a scientific discipline. In response to the increase in the…
Marnell Kirsten, Marina Joubert, Ionica Smeets, Winnifred Wijnker + 1 more
'Sukhjit Singh Sehra'] Terms like ‘big data’, ‘data science’, and ‘data visualisation’ have become buzzwords in recent years and are increasingly intertwined with journalism. Data visualisation may further blur the lines between science communication and graphic design. Our study is situated in these overlaps to…
Yao Wang, Chuhan Jiao, Mihai Bâce, Andreas Bulling
—Despite its importance for assessing the effectiveness of communicating information visually, fine-grained recallability of information visualisations has not been studied quantitatively so far. In this work, we propose a question-answering paradigm to study visualisation recallability and present VisRecall — a novel…
Dagny Aurich, Aida Horaniet Ibañez
Rhetoric is the study of the communication techniques used to inform, persuade, or motivate a given audience in a particular situation, modifying their conceptions and attitudes toward the object of communication. Visual rhetoric (as an artifact) is the purposeful production or arrangement of colors, forms, and other…
Yasmeen Anjeer Alshehhi, Mohamed Abdelrazek, Alessio Bonti
Personal data cover multiple aspects of our daily life and activities, including health, finance, social, Internet, Etc. Personal data visualisations aim to improve the user experience when exploring these large amounts of personal data and potentially provide insights to assist individuals in their decision making and…
Benjamin Lee, Michael Sedlmair, Dieter Schmalstieg
—Situated visualization has become an increasingly popular research area in the visualization community, fueled by advancements in augmented reality (AR) technology and immersive analytics. Visualizing data in spatial proximity to their physical referents affords new design opportunities and considerations not present…
Authors not listed
nDTomo is a Python-based software suite for the simulation, reconstruction and analysis of X-ray chemical imaging and computed tomography data. It provides a collection of Python function-based tools designed for accessibility and education as well as a graphical user interface (GUI). Prioritising transparency and ease…
Frederick George Vickery, Sébastien Kubicki, Charlotte Hoareau, Lucas Brand + 3 more
'Lucas Brand' 'Aurélien Duval' 'Séamus Thierry' 'Ronan Querrec'] One huge advantage of Augmented Reality (AR) is its numerous possibilities of displaying information in the physical world, especially when applying Situated Analytics (SitA). AR devices and their respective interaction techniques allow for supplementary…
D. Samuel Schwarzkopf, Xinran A. Yu, Ecem Altan, Loren N. Bouyer + 3 more
Research on mental visual imagery typically relies on vividness ratings. However, vividness is ill-defined as it lacks an objective reference. Here, we present survey results that suggest vividness is nevertheless a robust trait. It explains individual differences of a broad range of subjective experiences, from the…
Authors not listed
We introduce an open-source program that converts molecular dynamics trajectories into disconnectivity graphs, providing a concise and interpretable visualisation of the energy landscape that has been traversed. Our approach applies Savitzky–Golay smoothing to per-frame thermodynamic traces (potential energy in NVE/NVT…
D. Samuel Schwarzkopf, Xinran A. Yu, Ecem Altan, Loren N. Bouyer + 3 more
Research on mental visual imagery typically relies on vividness ratings. However, vividness is ill-defined as it lacks an objective reference. Here, we present survey results that suggest vividness is nevertheless a robust measure. It explains individual differences of a broad range of subjective experiences, from the…
Eleonora Parrotta, Katrina L. McDonough, Patric Bach
Recent approaches conceptualize mental imagery as a simulatory mode of perceptual experience, which relies on the voluntary engagement of the same top-down prediction processes that shape our perception of the external world. If so, then imagery should induce similar predictive biases as those that are known to govern…
Authors not listed
We present graphRC, a graph-based method for rapid transition state (TS) mode analysis that provides chemical insight along normal mode displacements and reaction coordinate trajectories by translating Cartesian displacements into meaningful internal coordinate changes. Internal coordinates are constructed using…
Authors not listed
Effective visualization of complex synthesis routes is critical for computeraided synthesis planning (CASP), yet current solutions are limited in scope, integration flexibility, and chemical intuition. We introduce RouteWise, a versatile, containerized web application designed to address these unmet needs. Its modular…