Role of intercellular interactions on single cell and population level responses: considerations for multicellular bioreporter design Lin and Martin 10.3389/fmolb.2025.1595363

Abstract

Introduction Bioreporters are genetically engineered cells that produce detectable responses in the presence of specific analytes, providing a cheap, mass-producible, and accurate method of analyte detection. Most research focuses on the single cell-level, where all engineering is concentrated on the interactions within a single cell. However, intercellular communication is a well-known natural phenomenon that has been associated with sensitive responses to certain chemical stimuli, yet incorporation of intercellular communication into bioreporter design is exceedingly rare and the effect of intercellular signaling on single-cellular and population level responses has not been explicitly characterized before. Methods In this work, a multicellular simulator implementing the Gillespie algorithm and compatible with Virtual Cell-designed networks is created and used to demonstrate nuances to multicellular stochastic simulations. The algorithm was used to simulate multiple cells in a reaction network in which a self-promoting and membrane permeable transcription factor also induces production of a cell-bound reporter protein. A proof-of-concept bioreporter that responded to an environmental analyte while leveraging intercellular interactions for signal production was also designed and simulated for 50 s of simulation time. Simulated systems with multiple cells were compared to single-cellular simulations. Results Simulations for 20 s of simulated time show that while final reporter protein count per cell decreased as cell count increased, aggregate final reporter protein number across all cells significantly increased. Interestingly, 50 s simulations show final reporter protein count per cell significantly increasing as the number of cells increases. Greater number of bioreporter cells resulted in significantly greater amounts of signal protein produced in response to the same amount of starting analyte both on the population level and on the individual cellular level.