25 papers · ranked by Valyu relevance
Eric-Jan Wagenmakers, Maarten Marsman, Tahira Jamil, Alexander Ly + 9 more
Bayesian parameter estimation and Bayesian hypothesis testing present attractive alternatives to classical inference using confidence intervals and p values. In part I of this series we outline ten prominent advantages of the Bayesian approach. Many of these advantages translate to concrete opportunities for pragmatic…
Udi Alter, Miranda A. Too, Robert A. Cribbie
Bayesian statistics has gained substantial popularity in the social sciences, particularly in psychology. Despite its growing prominence in the psychological literature, many researchers remain unacquainted with Bayesian methods and their advantages. This tutorial addresses the needs of curious applied psychology…
Jakub Bijak, John Bryant
Bayesian statistics offers an alternative to classical (frequentist) statistics. It is distinguished by its use of probability distributions to describe uncertain quantities, which leads to elegant solutions to many difficult statistical problems. Although Bayesian demography, like Bayesian statistics more generally…
Juan Sosa, Carlos Martínez, Cruz, Danna
This paper offers a comprehensive introduction to Bayesian inference, combining historical context, theoretical foundations, and core analytical examples. Beginning with Bayes' theorem and the philosophical distinctions between Bayesian and frequentist approaches, we develop the inferential framework for estimation…
Xuan Guo, Bing Liu, Le Chen, Guantao Chen + 2 more
This paper aims to review state-of-the-art Bayesian-inference-based methods applied to functional magnetic resonance imaging (fMRI) data. Particularly, we focus on one specific long-standing challenge in the computational modeling of fMRI datasets: how to effectively explore typical functional interactions from fMRI…
Brandon S Coventry, Edward L Bartlett
Typical statistical practices in the biological sciences have been increasingly called into question due to difficulties in replication of an increasing number of studies, many of which are confounded by the relative difficulty of null significance hypothesis testing designs and interpretation of p-values. Bayesian…
Branimir K. Hackenberger
According to different scientific literature databases (eg, ScienceDirect, Web of Science), each year more and more scientific articles use Bayesian methods for data processing ([F1]). Does this mean that Bayesian statistics is better than frequentist statistics? What can we achieve with Bayesian methods but not with…
Ya’acov Ritov
We argue that the Bayesian paradigm, of a prior which represents the beliefs of the statistician before observing the data, is not feasible in ultra-high dimensional models. We claim that natural priors that represent the a priori beliefs fail in unpredictable ways under values of the parameters that cannot be honestly…
Shuji Shinohara, Nobuhito Manome, Kouta Suzuki, Ung-il Chung + 4 more
In this study, we start by proposing a causal induction model that incorporates symmetry bias. This model has two parameters that control the strength of symmetry bias and includes conditional probability and conventional models of causal induction as special cases. It can reproduce causal induction of human judgment…
Natalia Levshina
In recent years, Bayesian statistics has gained traction across a wide range of scientific disciplines. This paper explores the growing application of Bayesian methods within the field of linguistics and considers their future potential. A survey of articles from different linguistics journals indicates that Bayesian…
Rianne de Heide, Peter Grünwald
Recently, optional stopping has been a subject of debate in the Bayesian psychology community. Rouder (2014) argues that optional stopping is no problem for Bayesians, and even recommends the use of optional stopping in practice, as do Wagenmakers et al. (2012). This article addresses the question whether optional…
Ernest Fokoué
This paper seeks to provide a thorough account of the ubiquitous nature of the Bayesian paradigm in modern statistics, data science and artificial intelligence. Once maligned, on the one hand by those who philosophically hated the very idea of subjective probability used in prior specification, and on the other hand…
Shuji Shinohara, Nobuhito Manome, Kouta Suzuki, Ung-il Chung + 5 more
Bayesian inference is a process of narrowing down hypotheses (causes) to one that best explains observational data (effects). To accurately estimate a cause, a considerable amount of data is required to be observed for as long as possible. However, the object of inference is not always constant. In this case, a method…
Rianne de Heide, Peter D. Grünwald
Recently, optional stopping has been a subject of debate in the Bayesian psychology community. Rouder (Psychonomic Bulletin & Review*21(2), 301-308, [33]) argues that optional stopping is no problem for Bayesians, and even recommends the use of optional stopping in practice, as do (Wagenmakers, Wetzels, Borsboom, van…
Chenxi Sui, Ziyang Jiang, Genesis Higueros, David Carlson + 1 more
High-performance batteries are poised for electrification of vehicles and therefore mitigate greenhouse gas emissions, which, in turn, promote a sustainable future. However, the design of optimized batteries is challenging due to the nonlinear governing physics and electrochemistry. Recent advancements have…
Authors not listed
The political, social and economic consequences of climate change drastically influence the requirements of modern energy systems and its components. This includes not only energy production but also concepts and innovations for its storage, especially in magnitudes of gigawatt hours. Carnot batteries, which convert…
Lucian Chan, Geoffrey Hutchison, Garrett Morris
Generating low-energy molecular conformers is a key task for many areas of computational chemistry, molecular modeling and cheminformatics. Most current conformer generation methods primarily focus on generating geometrically diverse conformers rather than finding the most probable or energetically lowest minima. Here…
Rens van de Schoot, Naomi Schalken, Miranda Olff
2.1.### Flexible hypothesis testing The first reason why Bayesian statistics is used is that it provides a flexible alternative to null hypothesis significance testing. van Veen, Engelhard, and van den Hout ([CIT0036]) tested several predictions from working memory theory that could explain the efficacy of eye movement…
Lucian Chan, Geoffrey Hutchison, Garrett Morris
Generating low-energy molecular conformers is a key task for many areas of computational chemistry, molecular modeling and cheminformatics. Most current conformer generation methods primarily focus on generating geometrically diverse conformers rather than finding the most probable or energetically lowest minima. Here…
Jacques Balayla
We define the information threshold as the point of maximum curvature in the prior vs. posterior Bayesian curve, both of which are described as a function of the true positive and negative rates of the classification system in question. The nature of the threshold is such that for sufficiently adequate binary…
Sterling Baird, Jason R. Hall, Taylor D. Sparks
Would you rather search for a line inside a cube or a point inside a square? This type of solution degeneracy often exists in physics-based simulations and wet-lab experiments, but constraining these degeneracies is often unsupported or difficult to implement in many optimization packages, requiring additional time and…
Hyemin Han
We developed and tested Bayesian multiple comparison correction method for Bayesian voxelwise second-level fMRI analysis with R. The performance of the developed method was tested with simulation and real image datasets. First, we compared false alarm and hit rates, which were used as proxies for selectivity and…
Authors not listed
Occupational chemical hazards pose profound risks to chemists in laboratory and industrial settings, encompassing acute and chronic exposures that imperil sensory organs (e.g., ocular, auditory, olfactory, dermal) and vital physiological systems. This manuscript delineates a multifaceted, innovative protocol suite…
Sterling Baird, Jason R. Hall, Taylor D. Sparks
Would you rather search for a line inside a cube or a point inside a square? Physics-based simulations and wet-lab experiments often have symmetries (degeneracies) that allow reducing problem dimensionality or search space, but constraining these degeneracies is often unsupported or difficult to implement in many…
Olga A. Vsevolozhskaya, Dmitri V. Zaykin
Testing millions of SNPs in genetic association studies has become standard routine for disease gene discovery, followed by prioritization of the strongest signals based on the set of the smallest P-values. In light of recent re-evaluation of statistical practice, it has been suggested that P-values are unfit as…