19 papers · ranked by Valyu relevance
Mukhtiar Ali, Harsh Dubey, Sugam Mishra, Chulwoo Pack
Benchmarking video-language models has largely focused on short clips and single-sentence metrics, leaving open whether current systems can generate accurate long-form, paragraph-level descriptions. We introduce CLIP-CC-Bench, an evaluation suite for long-form video description built from 5 hours of movie content…
Maria Katsantoni, Erik van Nimwegen, Mihaela Zavolan
Crosslinking and immunoprecipitation (CLIP) is used to determine the transcriptome-wide binding sites of RNA-binding proteins (RBPs). Here we present RCRUNCH, an end-to-end solution to CLIP data analysis that enables the reproducible identification of binding sites as well as the inference of RBP sequence specificity.…
Daniel Z.L. Kor, Hossein Rafipoor, Istvan N. Huszar, Adele Smart + 5 more
Biophysical modelling of diffusion MRI (dMRI) is used to non-invasively estimate microstructural features of tissue, particularly in the brain. However, meaningful description of tissue requires many unknown parameters, resulting in a model that is often ill-posed. The Bayesian EstimatioN of CHange (BENCH) framework…
Simon Erridge, Christopher J. Payne, Mikael Sodergren
Background Ligation clips are used ubiquitously throughout minimally invasive surgery for apposition of tissues. Their size limits their application beyond ligation of small tubular structures. A novel clip and clip applicator that allows for broad-area clamping and rotation has been developed by our team. The primary…
Guo Chen, Yi-Cheng Liu, Yifei Huang, Yuping He + 5 more
Understanding Authors: ['Guo Chen' 'Yi-Cheng Liu' 'Yifei Huang' 'Yuping He' 'Baoqi Pei' 'Jilan Xu' 'Yali Wang' 'Tong Lü' 'Limin Wang'] Most existing video understanding benchmarks for multimodal large language models (MLLMs) focus only on short videos. The limited number of benchmarks for long video understanding often…
John J. Guardiola, Douglas K. Rex, Christopher C. Thompson, Jeffrey Mosko + 4 more
'Jeffrey Mosko' 'Marvin Ryou' 'Joyce Peetermans' 'Matthew J Rousseau' 'Daniel von Renteln'] Background and study aims Endoscopic through-the-scope clips (TTSC) are used for hemostasis and closure. We documented the performance of a new TTSC with anchor prongs. Patients and methods We conducted a prospective case series…
Jaisidh Singh, Ishaan Shrivastava, Mayank Vatsa, Richa Singh + 1 more
Negations Authors: ['Jaisidh Singh' 'Ishaan Shrivastava' 'Mayank Vatsa' 'Richa Singh' 'Aparna Bharati'] > Abstract. Existing vision-language models (VLMs) treat text descriptions as a unit, confusing individual concepts in a prompt and impairing visual semantic matching and reasoning. An important aspect of reasoning…
Ningning Zhang, Leila Pazouki, Huong Nguyen, Sigrid Jacobshagen + 4 more
The unicellular green alga Chlamydomonas reinhardtii is an excellent model organism to investigate many essential cellular processes in photosynthetic eukaryotes. Two commonly used background strains of Chlamydomonas are CC-1690 and CC-5325. CC-1690, also called 21gr, has been used for the Chlamydomonas genome project…
Jiaxing Feng, Chunping Zhang, Jiachen Bao, Qingyu Xu + 2 more
Titanium clips are widely used in gastrointestinal endoscopy, especially during endoscopic surgical procedures. Their principal role is to efficiently close defects within the gastrointestinal tract, thereby mitigating the risk of postoperative complications 1234 . During clinical procedures, the alignment of the…
Koichiro Kawano, Mamoru Takenaka, Reiko Kawano, Daisuke Kagoshige + 3 more
The over-the-scope (OTS) clip is a nitinol endoscopic clip widely used for hemostasis and fistula closure in the gastrointestinal tract 123 . During OTS clip application, endoscopic suction pulls tissue into the tip hood and the clip is released for fistula closure; however, suction alone may be insufficient due to…
Li Ding, Jue Liu, Yixuan Ma, Litian Bai + 4 more
'Yinhang Cao' 'Olivier Girard'] Title: ABSTRACT Background Caffeine, widely used as an ergogenic aid, has been extensively studied regarding its dosage and timing of ingestion. However, the impact of different administration methods on caffeine’s performance-enhancing effects remains relatively underexplored. This…
Yueh-Fu O. Wu, Rachel A. Miller, Emily O. Alberico, Nora T. Nelson + 2 more
The cooperation between the actin and microtubule (MT) cytoskeletons is important for cellular processes such as cell migration and muscle cell development. Full understanding of how this cooperation occurs has yet to be sufficiently developed. The MT plus-end tracking protein (+TIP) CLIP-170 has been implicated in…
Bozheng Li, Yongliang Wu, Yi Lu, Jiashuo Yu + 6 more
'Jiawang Cao' 'Wenqing Zhu' 'Yuyang Sun' 'Jay Wu' 'Wenbo Zhu'] Widely shared videos on the internet are often edited. Recently, although Video Large Language Models (Vid-LLMs) have made great progress in general video understanding tasks, their capabilities in video editing understanding (VEU) tasks remain unexplored.…
Monika Wysoczańska, Michaël Ramamonjisoa, T. P. Trzcinski, Oriane Siméoni
'Oriane Siméoni'] The emergence of CLIP has opened the way for openworld image perception. The zero-shot classification capabilities of the model are impressive but are harder to use for dense tasks such as image segmentation. Several methods have proposed different modifications and learning schemes to produce dense…
Hwan Yi Joo, Cho Rong Park, Seokyoung Ahn, Chang In Choi + 1 more
The restored length of the clip opening was determined by subtracting the final deformation from the maximum deformation of the jaw, or the end of the clip, while applying and removing force. The restoration rate was calculated as the ratio of the maximum deformation to the restoration length. The results of this…
Heqin Zhu, Ruifeng Li, Ao Chang, Mingqian Li + 3 more
Accurate prediction of non-canonical (NC) base pairs is a pivotal step toward un-raveling the full functional landscape of RNA. This goal requires both a standardized dataset for evaluation and powerful models that overcome data limitations. Here, we make a dual contribution to this endeavor: the NC-Bench benchmark and…
Authors not listed
Benzo[b]thiophene 1,1-dioxide is a relatively underrepresented sulfone-embedded heterocycle with niche uses in material science (OLED emitters), pharmaceutical research (an electrophilic warhead in targeted covalent inhibitors) and as a structure unit in reversibly switchable diarylethene fluorophores.…
Dominique A. Ramirez, Loren E. Hough, Michael R. Shirts
Liquid-liquid phase separation (LLPS) is thought to be a main driving force in the formation of membraneless organelles. Examples of such organelles include the centrosome, central spindle, and stress granules. Recently, it has been shown that coiled-coil (CC) proteins might be capable of LLPS, such as the centrosomal…
Authors not listed
Coiled-coil proteins provide an excellent scaffold for multi-state de novo protein design due to their established sequence-to-structure relationships and ability to switch conformations in response to external stimuli, such as changes in pH or temperature. However, the computational design of multi-state coiled-coil…