9 papers · ranked by Valyu relevance
Elina Late, Michael Ochsner, Hong Qin
The aim of this paper is to investigate the re-use of research data deposited in digital data archive in the social sciences. The study examines the quantity, type, and purpose of data downloads by analyzing enriched user log data collected from Swiss data archive. The findings show that quantitative datasets are…
Hillary Elrick, Viswateja Nelakuditi, Greg Clark, Michael Brudno + 2 more
Cas-mediated genome editing has enabled researchers to perform mutagenesis experiments with relative ease. Effective genome editing requires tools for guide RNA selection, off-target prediction, and genotyping assay design. While independent tools exist for these functions, there is still a need for a comprehensive…
Oliver Schulte, Zhensong Qian
The position we advocate in this paper is that relational algebra can provide a unified language for both representing and computing with statistical-relational objects, much as linear algebra does for traditional single-table machine learning. Relational algebra is implemented in the Structured Query Language (SQL)…
Kenneth Skiba, Tjitze Rienstra, Matthias Thimm, Jesse Heyninck + 1 more
'Gabriele Kern-Isberner'] In this paper, we present a general framework for ranking sets of arguments in abstract argumentation based on their plausibility of acceptance. We present a generalisation of Dung's extension semantics as extension-ranking semantics, which induce a preorder over the power set of all…
Joshua Horton, Simon Boothroyd, Jeffrey Wagner, Joshua Mitchell + 9 more
The development of accurate transferable force fields is key to realizing the full potential of atomistic modelling in the study of biological processes such as protein--ligand binding for drug discovery. State-of-the-art transferable force fields, such as those produced by the Open Force Field Initiative, use modern…
Jouni Sirén, Benedict Paten
Existing pangenome file formats are designed for batch processing. Graphs must be loaded into memory, and alignment files must be read sequentially. Indexed file formats that can be used directly from disk would be more appropriate for interactive applications. We propose GBZ-base and GAF-base — SQLite-backed file…
Robert Shaw, Grant Hill
The basis set used in quantum chemical calculations for molecular applications is vital to the accuracy and efficiency of the calculation, but the development of novel basis sets is hindered by an opaque process and inaccessibility of the tools required. We present here BasisOpt, a tool for the automated optimization…
J. E. Cremona, Lassina Dembélé, Ariel Pacetti, Ciaran Schembri + 1 more
'John Voight'] Abstract. We study the rational Bianchi newforms (weight 2, trivial character, with rational Hecke eigenvalues) in the LMFDB that are not associated to elliptic curves, but instead to abelian surfaces with quaternionic multiplication. Two of these examples exhibit a rather special kind of behaviour: we…
Xu Dai, Xiaowang Zhang, Zuoquan Lin
—This paper presents a novel approach based on variable forgetting, which is a useful tool in resolving contradictory by filtering some given variables, to merging multiple knowledge bases. This paper first builds a relationship between belief merging and variable forgetting by using dilation. Variable forgetting is…