21 papers · ranked by Valyu relevance
Erik Friedgen, Iring Koch, Edita Poljac, Baptist Liefooghe + 1 more
The 2 × 2 ANOVA for RT with the within-subjects factors modality compatibility (incompatible vs. compatible) and switching (switch vs. repetition) revealed a significant effect of modality compatibility, F(1, 31) = 43.100, p < .001, η2p = .582, with a higher RT for modality-incompatible trials than for…
K. Scholtmeijer, B. Auxier, Patrick Hendrickx, B Lavrijssen + 4 more
During cultivation, mixing of different heterokaryotic individuals of the button mushroom, Agaricus bisporus, generally reduces yield. This phenomenon could be caused by direct antagonistic responses and/or reduced synchronization by not forming a chimeric hyphal network. In other fungi, highly divergent alleles for a…
Alexander Mazein, Adrien Rougny, Jonathan R. Karr, Julio Saez Rodriguez + 2 more
Detailed maps of the molecular basis of the disease are powerful tools for interpreting data and building predictive models. Modularity and composability are considered necessary network features for large-scale collaborative efforts to build comprehensive molecular descriptions of disease mechanisms. An effective way…
Motonori Yamaguchi, Jing Chen
The valence of stimuli can influence performance in the spatial stimulus-response compatibility task, but this observation could arise from the process of selecting responses or selecting stimulus-response mappings. The response-selection account proposes that spatial compatible and incompatible keypress responses…
Rishabh Kapoor, William C Sleeman IV, Preetam Ghosh, Jatinder Palta
To use and validate the defined ontology, we mapped our data housed in the clinical data warehouse relational database with the concepts and relationships listed in the ontology. This mapping process linked each component (column headers, values) of the SQL relational database to its corresponding clinical concept…
Kristoffer M. Frey, Ted J. Steiner, Jonathan P. How
— Data association in SLAM is fundamentally challenging, and handling ambiguity well is crucial to achieve robust operation in real-world environments. When ambiguous measurements arise, conservatism often mandates that the measurement is discarded or a new landmark is initialized rather than risking an incorrect…
Benjamin Ries, Irfan Alibay, David W H Swenson, Hannah M Baumann + 3 more
Relative binding free energy (RBFE) calculations have emerged as a powerful tool supporting ligand optimization in drug discovery. Despite many successes, the use of RBFEs can often be limited by automation problems, in particular the setup of such calculations. Atom mapping algorithms are an essential component in…
Keith Batesole, Kokulapalan Wimalanathan, Lin Liu, Fan Zhang + 2 more
'Craig S. Echt' 'Chun Liang'] Comparative genetic maps are used in examination of genome organization, detection of conserved gene order, and exploration of marker order variations. YouGenMap is an open-source web tool that offers dynamic comparative mapping capability of users' own genetic mapping between 2 or more…
Authors not listed
Chemical reactions are regarded as transformations of chemical structures, and the question of which atoms in the reactants correspond to which atoms in the products has attracted chemists for a long time. Atom-to-atom mapping (AAM) is a procedure that establishes such correspondence(s) between the atoms of reactants…
Bharadwaj, Sagar, Seshan, Srinivasan + 2 more
The emergence of the Spatial Web – the Web where content is tied to real-world locations has the potential to improve and enable many applications such as augmented reality, navigation, robotics, and more. The Spatial Web is missing a key ingredient that is impeding its growth – a spatial naming system to resolve…
Chirag Jain, Sergey Koren, Alexander Dilthey, Adam M. Phillippy + 1 more
Whole-genome alignment is an important problem in genomics for comparing different species, mapping draft assemblies to reference genomes, and identifying repeats. However, for large plant and animal genomes, this task remains compute and memory intensive. We introduce an approximate algorithm for computing local…
Haowen Zhang, Li Song, Xiaotao Wang, Haoyu Cheng + 8 more
We present Chromap, an ultrafast method for aligning and preprocessing high throughput chromatin profiles. Chromap is comparable to BWA-MEM and Bowtie2 in alignment accuracy and is over 10 times faster than traditional workflows on bulk ChIP-seq / Hi-C profiles and than 10x Genomics’ CellRanger v2.0.0 pipeline on…
Chris Zhang, Mary Pitman, Anjali Dixit, Sumudu Leelananda + 7 more
DNA-encoded libraries (DELs) provide the means to make and screen millions of diverse compounds against a target of interest in a single experiment. However, despite producing large volumes of binding data at a relatively low cost, the DEL selection process is susceptible to noise, necessitating computational follow-up…
Tizian Schulz, Paul Medvedev
Given a sequencing read, the broad goal of read mapping is to find the location(s) in the reference genome that have a “similar sequence”. Traditionally, “similar sequence” was defined as having a high alignment score and read mappers were viewed as heuristic solutions to this well-defined problem. For sketch-based…
Sagar Bharadwaj, Lucy Yueming Wang, Mike K. Liang, Howard Williams + 3 more
service Authors: ['Sagar Bharadwaj' 'Lucy Yueming Wang' 'Mike K. Liang' 'Howard Williams' 'Ivan Liang' 'Srinivasan Seshan' 'Anthony Rowe'] The widespread availability of maps has enabled the development of numerous location-based applications, including navigation, ride-sharing, fitness tracking, gaming, robotics, and…
Richard Apodaca
Despite its widespread use, Simplified Molecular Input Line Entry System (SMILES) remains underspecified. The lack of a detailed specification encourages improvisation by software developers, complicates data standardization efforts, and undermines extension development. Balsa, a reformulation of SMILES, addresses…
Sergio Rivas-Gomez, Roberto Gioiosa, Ivy Bo Peng, Gökçen Kestor + 3 more
'Sai Narasimhamurthy' 'Erwin Laure' 'Stefano Markidis'] Upcoming HPC clusters will feature hybrid memories and storage devices per compute node. In this work, we propose to use the MPI one-sided communication model and MPI windows as unique interface for programming memory and storage. We describe the design and…
Mohsen Ghasempour, Jim Garside, Aamer Jaleel, Mikel Luján
The initial location of data in DRAMs is determined and controlled by the 'address-mapping' and even modern memory controllers use a fixed and run-time-agnostic address mapping. On the other hand, the memory access pattern seen at the memory interface level will dynamically change at run-time. This dynamic nature of…
Halil Utku Unlu, Anthony Tzes, P. Krishnamurthy, Farshad Khorrami
Tomographic Features Authors: ['Halil Utku Unlu' 'Anthony Tzes' 'P. Krishnamurthy' 'Farshad Khorrami'] A robust, resource-efficient, distributed, and minimally parameterized 3D map matching and merging algorithm is proposed. The suggested algorithm utilizes tomographic features from 2D projections of horizontal…
Saeed Gholami Shahbandi, Martin Magnusson
In many applications of autonomous mobile robots the following problem is encountered. Two maps of the same environment are available, one a prior map and the other a sensor map built by the robot. To benefit from all available information in both maps, the robot must find the correct alignment between the two maps.…
Markus Orsi, Daniel Probst, Philippe Schwaller, Jean-Louis Reymond
Chemical space maps help visualize similarities within molecular sets. However, there are many different molecular similarity measures resulting in a confusing number of possible comparisons. To overcome this limitation, we exploit the fact that tools designed for reaction informatics also work for alchemical processes…