23 papers · ranked by Valyu relevance
Mohd Nadhir Ab Wahab, Samia Nefti-Meziani, Adham Atyabi, Catalin Buiu
'Catalin Buiu'] Many swarm optimization algorithms have been introduced since the early 60’s, Evolutionary Programming to the most recent, Grey Wolf Optimization. All of these algorithms have demonstrated their potential to solve many optimization problems. This paper provides an in-depth survey of well-known…
Nazmul Siddique, Hojjat Adeli
This paper presents an overview of significant advances made in the emerging field of nature-inspired computing (NIC) with a focus on the physics- and biology-based approaches and algorithms. A parallel development in the past two decades has been the emergence of the field of computational intelligence (CI) consisting…
Eugene Eberbach
Evolution by natural selection, which is one of the most compelling themes of modern science, brought forth evolutionary algorithms and evolutionary computation, applying mechanisms of evolution in nature to various problems solved by computers. In this paper we concentrate on evolutionary automata that constitute an…
Xin‐She Yang
Many optimization algorithms have been developed by drawing inspiration from swarm intelligence (SI). These SI-based algorithms can have some advantages over traditional algorithms. In this paper, we carry out a critical analysis of these SI-based algorithms by analyzing their ways to mimic evolutionary operators. We…
Mihai Oltean
A new model for evolving Evolutionary Algorithms (EAs) is proposed in this paper. The model is based on the Multi Expression Programming (MEP) technique. Each MEP chromosome encodes an evolutionary pattern which is repeatedly used for generating the individuals of a new generation. The evolved pattern is embedded into…
Steve O'Hagan, Joshua Knowles, Douglas B. Kell, Josh Bongard
Comparatively few studies have addressed directly the question of quantifying the benefits to be had from using molecular genetic markers in experimental breeding programmes (e.g. for improved crops and livestock), nor the question of which organisms should be mated with each other to best effect. We argue that this…
Licheng Jiao, Jiaxuan Zhao, Chao Wang, Xu Liu + 6 more
'Lingling Li' 'Ronghua Shang' 'Yangyang Li' 'Wenping Ma' 'Shuyuan Yang'] Nature, with its numerous surprising rules, serves as a rich source of creativity for the development of artificial intelligence, inspiring researchers to create several nature-inspired intelligent computing paradigms based on natural mechanisms.…
Hassan A. Bashir, R.S. Neville
This material represents the opinion of the author only and does not necessarily represent the opinion of the School or the University. While every attempt has been made to ensure the accuracy of this publication, neither the author, the School or the University can accept liability for mistakes that may exist. Please…
Daniel Gaissmaier, Matthias van den Borg, Donato Fantauzzi, Timo Jacob
In this work, we demonstrate the superior exploration capabilities of the population-based methods over the sequential one-parameter parabolic interpolation (SOPPI) approach to optimise ReaxFF force field parameters. Evolutionary algorithms (EAs) are heuristic-based approaches using a population of concurrent models in…
Ka‐Chun Wong
Representation involves genotype representation and genotype-phenotype mapping. In general, designers try to keep genotype representation as compact as possible while keeping it as close to the corresponding phenotype representations as possible such that measurement metrics, say distance, in the genotype space can be…
Ali Fozooni, Osman Kamari, Mostafa Pourtalebiyan, Masoud Gorgich + 2 more
'Mohammad Khalilzadeh' 'Amin Valizadeh'] In this study, we evaluate several nongradient (evolutionary) search strategies for minimizing mathematical function expressions. We developed and tested the genetic algorithms, particle swarm optimization, and differential evolution in order to assess their general efficacy in…
Olga Speck, Thomas Speck, Sabine Baur, Michael Herdy + 3 more
'Laith Abualigah' 'Xuewen Xia'] With a focus on education and teaching, we provide general background information on bioinspired optimization methods by comparing the concept of optimization and the search for an optimum in engineering and biology. We introduce both the principles of Darwinian evolution and the basic…
José A. García Gutiérrez, Carlos Cotta, Antonio J. Fernández
In general Evolutionary Computation (EC) includes a number of optimization methods inspired by biological mechanisms of evolution. The methods catalogued in this area use the Darwinian principles of life evolution to produce algorithms that returns high quality solutions to hard-to-solve optimization problems. The main…
Edith Invernizzi, Graeme D Ruxton
The metaphor of fitness landscapes is common in evolutionary biology, as a way to visualise the change in allele or phenotypic frequencies of a population under selection. Understanding how different factors in the evolutionary process affect the trajectory of the population across the landscape is of interest to both…
Dogan Corus, Duc-Cuong Dang, Anton V. Eremeev, Per Kristian Lehre
Understanding how the time-complexity of evolutionary algorithms (EAs) depend on their parameter settings and characteristics of fitness landscapes is a fundamental problem in evolutionary computation. Most rigorous results were derived using a handful of key analytic techniques, including drift analysis. However…
Jonas Verhellen
Computer-assisted design of small molecules has experienced a resurgence in academic and indus- trial interest due to the widespread use of data-driven techniques such as deep generative models. While the ability to generate molecules that fulfill required chemical properties is encouraging, the use of deep learning…
Lillian T. Tatka, Lucian P. Smith, Herbert M. Sauro
Evolutionary algorithms, a class of optimization techniques inspired by biological evolution, have emerged as powerful tools for the optimization of complex systems, including the evolution of mass-action chemical reaction networks. This work explores the application of evolutionary algorithms in this domain…
Brianna Greenstein, Danielle Elsey, Geoffrey Hutchison
Genetic algorithms (GAs) are a powerful tool to search large chemical spaces for inverse molecular design. However, GAs have multiple hyperparameters that have not been thoroughly investigated for chemical space searches. In this work, we examine the general effects of a number of hyperparameters, such as population…
Martín Gutiérrez, Yerko Ortiz, Javier Carrión
Metaheuristic procedures (MH) have been a trend driving Artificial Intelligence (AI) researchers for the past 50 years. A variety of tools and applications (not only in Computer Science) stem from these techniques. Also, MH frequently rely on evolution, a trademark process involved in cell colony growth. Generally, MH…
Artem Kaznatcheev
Valiant [1] proposed to treat Darwinian evolution as a special kind of computational learning from statistical queries. The statistical queries represent a genotype’s fitness over a distribution of challenges. And this distribution of challenges along with the best response to them specify a given abiotic environment…
Authors not listed
Genetic Algorithms are a powerful method to solve optimization problems with complex cost functions over vast search spaces that rely in particular on recombining parts of previous solutions. Crossover operators play a crucial role in this context. Here, we describe a large class of these operators designed for…
Andre KY Low, Flore Mekki-Berrada, Aleksandr Ostudin, Jiaxun Xie + 7 more
The development of automated high-throughput experimental platforms has enabled fast sampling of high-dimensional decision spaces. To reach target properties efficiently, these platforms are increasingly paired with intelligent experimental design. When solving optimization problems, Bayesian-based optimizers are often…
Casper Steinmann, Jan H. Jensen
A graph-based genetic algorithm (GA) is used to identify molecules (ligands) with high absolute docking scores as estimated by the Glide software, starting from randomly chosen molecules from the ZINC database, for four different targets: Bacillus subtilis chorismate mutase (CM), human β 2 -adrenergic G protein-coupled…