26 papers · ranked by Valyu relevance
Anurag Priyam, Ben J. Woodcroft, Vivek Rai, Alekhya Munagala + 7 more
The dramatic drop in DNA sequencing costs has created many opportunities for novel biological research. These opportunities largely rest upon the ability to effectively compare newly obtained and previously known sequences. This is commonly done with BLAST, yet using BLAST directly on new datasets requires substantial…
Samiyuru Menik, Sriyal Jayasinghe
—Highly customized graphical user interfaces play a major role in today's software applications. There exist many technologies that support developing them. But these technologies demand writing a significant amount of unintuitive code to implement customized graphical user interfaces. Also, the support of these…
Ling-Hong Hung, Daniel Kristiyanto, Sung Bong Lee, Ka Yee Yeung + 1 more
'Lennart Martens'] Reproducibility is vital in science. For complex computational methods, it is often necessary, not just to recreate the code, but also the software and hardware environment to reproduce results. Virtual machines, and container software such as Docker, make it possible to reproduce the exact…
Authors not listed
nDTomo is a Python-based software suite for the simulation, reconstruction and analysis of X-ray chemical imaging and computed tomography data. It provides a collection of Python function-based tools designed for accessibility and education as well as a graphical user interface (GUI). Prioritising transparency and ease…
Martin Šícho, Xuhan Liu, Daniel Svozil, Gerard van Westen
This manuscript describes the development and architecture of the GenUI software platform for integration of molecular generators. The source code for the components of the platform is available in the following repositories: https://github.com/martin-sicho/genui https://github.com/martin-sicho/genui-gui…
Miria C Correa, Helena F Deus, Ana T Vasconcelos, Yuki Hayashi + 3 more
'Jaffer A Ajani' 'Srikrishna V Patnana' 'Jonas S Almeida'] Background AGUIA is a front-end web application originally developed to manage clinical, demographic and biomolecular patient data collected during clinical trials at MD Anderson Cancer Center. The diversity of methods involved in patient screening and sample…
Matthias Ley, Kinga Kęska-Izworska, Lucas Fillinger, Samuel M Walter + 8 more
Biological network visualization together with graph-based analyses are key techniques in systems biology and network medicine to detect patterns and generate hypotheses regarding disease pathobiology, drug target identification, biomarker prioritization, and digital drug discovery. Network representations provide an…
Micaela Raposo, Sara Eloy, Miguel Sales Dias, Lisa A. Pace
This research addresses housing customisation by using digital tools in co-design processes. This paper introduces the development of a Graphical User Interface (GUI) that assists the end-users’ interaction with the design process. Although the participation of end users in the design process is considered essential, a…
Himaghna Bhattacharjee, Jackson Burns, Dionisios Vlachos
The recent advances in deep learning, generative modeling, and statistical learning have ushered in a renewed interest in traditional cheminformatics tools and methods. Quantifying molecular similarity is essential in molecular generative modeling, exploratory molecular synthesis campaigns, and drug-discovery…
Hung Viet Pham, Tam Thi Thanh Nguyen, Phong Vu, Tung Thanh Nguyen
—In this paper, we define visual log of a software system as data capturing the interactions between its users and its graphic user interface (GUI), such as screen-shots and screen recordings. We vision that mining such visual log could be useful for bug reproducing and debugging, automated GUI testing, user interface…
Ermes Botte, Pietro Vagaggini, Ilaria Zanoni, Davide Gardini + 2 more
Accurate dosing of nanoparticles is crucial for risk assessment and for their safe use in medical and other applications. Although it is well-known that nanoparticles sediment, diffuse and aggregate as they move through a fluid, and that therefore the effective dose perceived by cells may not necessarily be that…
X. Michalet
Fluorescence Lifetime Imaging (FLI) is a technique recording the temporal decay of fluorescence emission at every pixel of an image. Analyzing the information embedded in FLI dataset requires either fitting the decay to a predefined model using nonlinear least-square fit or maximum likelihood estimation, or projecting…
David Carter, Luiz Fernando Capretz
Three-dimension will be a characteristic of future user interfaces, although we are just starting to gain an understanding of how users can navigate and share information within a virtual 3D environment. Threedimensional graphical user interfaces (3D-GUI) raise many issues of design, metaphor and usability. This…
Zachary Caterer, Rachel V. Horejsi, Carly Weber, Blake Mathisen + 9 more
Image-based phenotypic screening is a fundamental technique used to better understand the basic biology of helminths and advance discovery of new anthelmintics. Miniaturization of screening platforms and automated microscopy have led to a surge in imaging data and necessitated software to organize and analyze these…
Umakant Mishra
| 1. Introduction 1 | | | --- | --- | | 2. Inventions on GUI aesthetics 2 | | | 2.1 Generating 3 Dimensional effects in 2 Dimensional Graphical User | | | Interface (5864343) 2 | | | 2.2 Improved GUI with Anthropomorphic characters (5886697) 3 | | | 2.3 Aspect and style elements of an improved graphical user interface…
Authors not listed
The exponential growth of chemical literature necessitates the development of automated tools for extracting and curating molecular information from unstructured scientific publications into open-access chemical databases. Current optical chemical structure recognition (OCSR) and named entity recognition solutions…
Sergey Andreyev
The mechanism of communication between users and devices is called interface. From time to time changes in interface significantly improve our work with computers even without any serious changes in programs themselves. Main ideas in PCs interface were introduced many years ago and since then there are no significant…
Oliver Lee, Malte Gather, Eli Zysman-Colman
We describe a new tool for the efficient management of computational chemistry. Digichem is a program that automates and simplifies nearly the entire computational pipeline, including large-scale batch submission of calculations, analysis and results parsing, the generation of 3D density plots and 2D graphs of…
Sebastian Spreizer, Johanna Senk, Stefan Rotter, Markus Diesmann + 1 more
Simulation software for spiking neuronal network models matured in the past decades regarding performance and flexibility. But the entry barrier remains high for students and early career scientists in computational neuroscience since these simulators typically require programming skills and a complex installation.…
Gervasio Varela, Alejandro Paz-Lopez, Jose A. Becerra, Richard Duro + 2 more
'Vladimir Villarreal' 'Carmelo R. García'] This paper addresses the problem of developing user interfaces for Ubiquitous Computing (UC) and Ambient Intelligence (AmI) systems. These kind of systems are expected to provide a natural user experience, considering interaction modalities adapted to the user abilities and…
Gota Morota, Hao Cheng, Dianne Cook, Emi Tanaka
Statistical graphics, and data visualization, play an essential but under-utilized, role for data analysis in animal science, and also to visually illustrate the concepts, ideas, or outputs of research and in curricula. The recent rise in web technologies and ubiquitous availability of web browsers enables easier…
Johanna Casado, Wanda Díaz-Merced, B. Garćıa
inclusion for visual disable scientists Authors: ['Johanna Casado' 'Wanda Díaz-Merced' 'B. Garćıa'] Abstract. Most tools for astrophysical research was centered on visual display. Even after some studies shows that the use of sound could help the data analysis, and on the other hand generate more accessibility. This…
Gergely Zahoránszky-Kőhalmi, Brandon Walker, Nathan Miller, Brett Yang + 11 more
The recent SmartGraph platform facilitates the execution of complex drug-discovery workflows with ease in the network-pharmacology paradigm. However, at the time of its publication, we identified the need for the development of an Application Programming Interface (API) that could promote biomedical data integration…
David Meijer, Marnix H. Medema, Justin J. J. van der Hooft
Effective visualization of small molecules is paramount in conveying concepts and results in cheminformatics. Scalable vector graphics (SVG) are preferred for creating such visualizations, as SVGs can be easily altered in post-production and exported to other formats. A wide spectrum of software applications already…
Sergey Andreyev
Users can't talk with computers in their natural language (machine codes), so there are interfaces that allow such communication. 40 years ago the outcome of computer programs was in the form of long listings covered by numbers and even the format of those numbers was determined by developers. Throughout the latest 25…
Hadrien Caron, Pierre Pouget
To elicit complex and rich graphical displays, and record neuronal phenomena ofinterest while all simultaneously being capable to interact in a closed-loop with external devises is a challenging task to all neurophysiologists. To facilitate this process, we have developed an Open-Source software system using a single…