26 papers · ranked by Valyu relevance
Karl W. Broman
Every data visualization can be improved with some level of interactivity. Interactive graphics hold particular promise for the exploration of high-dimensional data. R/qtlcharts is an R package to create interactive graphics for experiments to map quantitative trait loci (QTL; genetic loci that influence quantitative…
Tracey L. Weissgerber, Vesna D. Garovic, Marko Savic, Stacey J. Winham + 1 more
'Stacey J. Winham' 'Natasa M. Milic'] Data presentation for scientific publications in small sample size studies has not changed substantially in decades. It relies on static figures and tables that may not provide sufficient information for critical evaluation, particularly of the results from small sample size…
Pamela Liebig, Heike Pröhl, Nadine Sudhaus-Jörn, Julia Hankel + 2 more
'Christian Visscher' 'Klaus Jung'] In veterinary education, data from biomedical or natural sciences are mostly presented in the form of static or animated graphics with no or little amount of interactivity. These kinds of presentations are, however, often not sufficient to depict the complexity of the data or the…
Yihui Xie, Heike Hofmann, Xiaoyue Cheng
One of the big challenges of developing interactive statistical applications is the management of the data pipeline, which controls transformations from data to plot. The user's interactions needs to be propagated through these modules and reflected in the output representation at a fast pace. Each individual module…
Gota Morota, Hao Cheng, Dianne Cook, Emi Tanaka
Statistical graphics, and data visualization, play an essential but under-utilized, role for data analysis in animal science, and also to visually illustrate the concepts, ideas, or outputs of research and in curricula. The recent rise in web technologies and ubiquitous availability of web browsers enables easier…
Oluwateniayo O. Ogunsan, Daniel Lobo
Mathematical models formally and precisely represent biological mechanisms with complex dynamics. To understand the possible behaviors of such systems, phase portrait diagrams can be used to visualize their overall global dynamics across a domain. However, producing these phase portrait diagrams is a laborious process…
Xiaoyue Cheng, Dianne Cook, Heike Hofmann
Temporal data is information measured in the context of time. This contextual structure provides components that need to be explored to understand the data and that can form the basis of interactions applied to the plots. In multivariate time series we expect to see temporal dependence, long term and seasonal trends…
Authors not listed
For decades, molecular visualization software has been fundamental to education and research in chemistry, structural biology, and materials science. These tools have enabled the inspection of structures, dynamics, and interactions, yet their reliance on two-dimensional (2D) interfaces imposes persistent limitations.…
Victor Cavaller
This article consists of a conceptual analysis-from the perspective of communication sciences-of the relevant aspects that should be considered during operational steps in data visualization. The analysis is performed taking as a reference the components that integrate the communication framework theory-the message…
Xiaoke He
In the modern environment, visual communication design has become a comprehensive subject that combines technology and art. The development of various technologies has promoted the emergence of new design art forms, and at the same time, it has also promoted the change of design concepts and thinking modes. Visual…
Jonathan Zong, Josh Pollock, Dylan Wootton, Arvind Satyanarayan
— We present Animated Vega-Lite, a set of extensions to Vega-Lite that model animated visualizations as time-varying data queries. In contrast to alternate approaches for specifying animated visualizations, which prize a highly expressive design space, Animated Vega-Lite prioritizes unifying animation with the…
Zhigang Lu, Yanyan Zhang
In biological research analysis of large data sets, such as RNA-seq gene expression, often involves visualisation of thousands of data points and associated database query. Static charts produced by traditional tools lack the ability to reveal underlying information, and separated database query is laborious and…
Tom C. Freeman, Sebastian Horsewell, Anirudh Patir, Josh Harling-Lee + 5 more
Quantitative and qualitative data derived from the analysis of genomes, genes, proteins or metabolites from tissue or cells are currently generated in huge volumes during biomedical research. Graphia is an open-source platform created for the graph-based analysis of such complex data, e.g. transcriptomics, proteomics…
Kari Lavikka, Jaana Oikkonen, Yilin Li, Taru Muranen + 9 more
Visualization is an indispensable facet of genomic data analysis. Despite the abundance of specialized visualization tools, there remains a distinct need for tailored solutions. However, their implementation typically requires extensive programming expertise from bioinformaticians and software developers, especially…
Benjamin Lee, Arvind Satyanarayan, Maxime Cordeil, Arnaud Prouzeau + 2 more
When a visualisation changes between visual states, animation is commonly used to help viewers maintain awareness of how data marks have changed throughout the transition , thus minimising change blindness . Various grammars and toolkits have been developed to aid designers in creating animated 2D statistical graphics…
Qirui Huang, Min Lü, Joel Lanir, Dani Lischinski + 2 more
'Hui Huang'] Information graphics are pivotal in effective information dissemination and storytelling. However, creating such graphics is extremely challenging for non-professionals, since the design process requires multifaceted skills and comprehensive knowledge. Thus, despite the many available authoring tools, a…
Authors not listed
Effective visualization of complex synthesis routes is critical for computeraided synthesis planning (CASP), yet current solutions are limited in scope, integration flexibility, and chemical intuition. We introduce RouteWise, a versatile, containerized web application designed to address these unmet needs. Its modular…
Wei Zhang, Jonathan A Fine, Christopher Sculley, Jordon McGraw + 1 more
The representation of complex biomolecular structures and interactions is a difficult challenge across life sciences. Researchers and students use unintuitive 2D representations to gain an intuitive understanding of 3D space and molecular interactions. Since this is cumbersome for complex structures, such as…
David Meijer, Marnix H. Medema, Justin J. J. van der Hooft
Effective visualization of small molecules is paramount in conveying concepts and results in cheminformatics. Scalable vector graphics (SVG) are preferred for creating such visualizations, as SVGs can be easily altered in post-production and exported to other formats. A wide spectrum of software applications already…
Miao Song
| By: | Miao Song | | | --- | --- | --- | | Entitled: | Computer-Assisted Interactive Documentary and Performance | | | Arts in Illimitable Space | | | | and submitted in partial fulfillment of the requirements for the degree of | | | | Doctor of Philosophy | | | | complies with the regulations of the University and…
Gunther Eysenbach, Jessica Ancker, Talya Miron-Shatz, Brian J Zikmund-Fisher + 2 more
'Brian J Zikmund-Fisher' 'Mark Dickson' 'Holly O Witteman'] Background Paper-based patient decision aids generally present risk information using numbers and/or static images. However, limited psychological research has suggested that when people interactively graph risk information, they process the statistics more…
Jon Chapman
This paper introduces SGL, a graphics language that is aesthetically similar to SQL. SGL is based on traditional grammars of graphics, as well as Vega-Lite's composition algebra. SGL demonstrates that the grammatical approach to graphics lends itself naturally to a SQL-like language. As a graphical counterpart to SQL…
Anton Stratmann, Martin Beyß, Johann F. Jadebeck, Katharina Nöh
Understanding input-output relationships within multivariate datasets is an ubiquitous task in the life and data sciences. For this, visual analysis is indispensable for providing expressive summaries and preparing decision-making. We present the visual analysis approach and software MooViE, which is designed to strike…
Muhammed Khawatmi, Yoann Steux, Sadam Zourob, Heba Sailem
Intuitive visualisation of quantitative microscopy data is crucial for interpreting and discovering new patterns in complex bioimage data. Existing visualisation approaches, such as bar charts, scatter plots and heat maps, do not accommodate the complexity of visual information present in microscopy data. Here we…
Hiroko Satoh, Akira Narita, Atsushi Aoki, Katsuhito Akahane + 1 more
Virtual reality technology has been recently more intensively applied in chemistry. HaptiChem, which was developed in 2006, is one of the systems appeared in the early stage of this field. It is an intermolecular force display system, which makes it possible to touch and move molecules as feeling intermolecular force…
Authors not listed
Here, we present MolPic, an open-source Python-based software that can be used to generate high-resolution, publication-quality molecular figures directly from compound names or SMILES strings. MolPic supports single-molecule rendering, batch processing, and automated multi-panel 2D figure generation, which are…