23 papers · ranked by Valyu relevance
Oluwateniayo O. Ogunsan, Daniel Lobo
Mathematical models formally and precisely represent biological mechanisms with complex dynamics. To understand the possible behaviors of such systems, phase portrait diagrams can be used to visualize their overall global dynamics across a domain. However, producing these phase portrait diagrams is a laborious process…
Pamela Liebig, Viviane Filor, Mariana Scheumann, Martina Buchholz + 1 more
'Klaus Jung'] Many academic teachers present data as static graphics in their lectures and courses. However, data structures have become more complex in the last decades, especially in the biomedical disciplines, and interactive graphics can provide a better means to communicate the scientific contents to students.…
Michael E. Deagen, Jamie P. McCusker, Tolulomo Fateye, Samuel Stouffer + 3 more
'Samuel Stouffer' 'L. Cate Brinson' 'Deborah L. McGuinness' 'Linda S. Schadler'] Graph databases capture richly linked domain knowledge by integrating heterogeneous data and metadata into a unified representation. Here, we present the use of bespoke, interactive data graphics (bar charts, scatter plots, etc.) for…
Pamela Liebig, Heike Pröhl, Nadine Sudhaus-Jörn, Julia Hankel + 2 more
'Christian Visscher' 'Klaus Jung'] In veterinary education, data from biomedical or natural sciences are mostly presented in the form of static or animated graphics with no or little amount of interactivity. These kinds of presentations are, however, often not sufficient to depict the complexity of the data or the…
Authors not listed
For decades, molecular visualization software has been fundamental to education and research in chemistry, structural biology, and materials science. These tools have enabled the inspection of structures, dynamics, and interactions, yet their reliance on two-dimensional (2D) interfaces imposes persistent limitations.…
Xiaoke He
In the modern environment, visual communication design has become a comprehensive subject that combines technology and art. The development of various technologies has promoted the emergence of new design art forms, and at the same time, it has also promoted the change of design concepts and thinking modes. Visual…
Jonathan Zong, Josh Pollock, Dylan Wootton, Arvind Satyanarayan
— We present Animated Vega-Lite, a set of extensions to Vega-Lite that model animated visualizations as time-varying data queries. In contrast to alternate approaches for specifying animated visualizations, which prize a highly expressive design space, Animated Vega-Lite prioritizes unifying animation with the…
Svetlana Ovchinnikova, Simon Anders
In any research project involving data-rich assays, exploratory data analysis is a crucial step. Typically, this involves jumping back and forth between visualizations that provide overview of the whole data and others that dive into details. In data quality assessment, for example, it might be very helpful to have one…
Seyyed Ali Zeytoon Nejad Moosavian
Syllabus is essentially a concise outline of a course of study, and conventionally a text document. In the past few decades, however, two novel variations of syllabus have emerged, namely "the Graphic Syllabus" and "the Interactive Syllabus". Each of these two variations of syllabus has its own special advantages. The…
Jeremy Warner, Kyu Won Kim, Bjoern Hartmann
Vector graphics are an industry-standard way to represent and share visual designs. Designers frequently source and incorporate styles from existing designs into their work. Unfortunately, popular design tools are not well suited for this task. We present VST, Vector Style Transfer, a novel design tool for flexibly…
Kari Lavikka, Jaana Oikkonen, Yilin Li, Taru Muranen + 9 more
Visualization is an indispensable facet of genomic data analysis. Despite the abundance of specialized visualization tools, there remains a distinct need for tailored solutions. However, their implementation typically requires extensive programming expertise from bioinformaticians and software developers, especially…
Benjamin Lee, Arvind Satyanarayan, Maxime Cordeil, Arnaud Prouzeau + 2 more
When a visualisation changes between visual states, animation is commonly used to help viewers maintain awareness of how data marks have changed throughout the transition , thus minimising change blindness . Various grammars and toolkits have been developed to aid designers in creating animated 2D statistical graphics…
Qirui Huang, Min Lü, Joel Lanir, Dani Lischinski + 2 more
'Hui Huang'] Information graphics are pivotal in effective information dissemination and storytelling. However, creating such graphics is extremely challenging for non-professionals, since the design process requires multifaceted skills and comprehensive knowledge. Thus, despite the many available authoring tools, a…
Authors not listed
Effective visualization of complex synthesis routes is critical for computeraided synthesis planning (CASP), yet current solutions are limited in scope, integration flexibility, and chemical intuition. We introduce RouteWise, a versatile, containerized web application designed to address these unmet needs. Its modular…
Yun Peng, Yuxuan Song, Peng Luo, Jianfeng Li + 4 more
Composable visualization is essential in biomedical research, particularly when working with complex, multi-dimensional biological data. However, many existing tools focus on specific fields and lack the comprehensive features needed to capture the intricacies and interrelations of datasets. To address this, we…
Christina Humer, Henry Heberle, Floriane Montanari, Thomas Wolf + 4 more
The introduction of machine learning to small molecule research – an inherently multidisciplinary field in which chemists and data scientists combine their expertise and collaborate – has been vital to making screening processes more efficient. In recent years, numerous models that predict pharmacokinetic properties or…
David Meijer, Marnix H. Medema, Justin J. J. van der Hooft
Effective visualization of small molecules is paramount in conveying concepts and results in cheminformatics. Scalable vector graphics (SVG) are preferred for creating such visualizations, as SVGs can be easily altered in post-production and exported to other formats. A wide spectrum of software applications already…
Boyi Guo, Stephanie C. Hicks
The creation of effective visualizations is a fundamental component of data analysis. In biomedical research, new challenges are emerging to visualize multi-dimensional data in a 2D space, but current data visualization tools have limited capabilities. To address this problem, we leverage Gestalt principles to improve…
Cong Mo, Khachakrit Liamthaisong, Jantima Polpinij, Dragana Bajic + 2 more
Highlights What are the main findings?1. The developed human-centered motion graphics system demonstrated relatively high usability with moderate cognitive load among older adults in depression-related health communication contexts. 2. Visual clarity, structured content organization, and appropriate motion pacing were…
Jon Chapman
This paper introduces SGL, a graphics language that is aesthetically similar to SQL. SGL is based on traditional grammars of graphics, as well as Vega-Lite's composition algebra. SGL demonstrates that the grammatical approach to graphics lends itself naturally to a SQL-like language. As a graphical counterpart to SQL…
Anton Stratmann, Martin Beyß, Johann F. Jadebeck, Katharina Nöh
Understanding input-output relationships within multivariate datasets is an ubiquitous task in the life and data sciences. For this, visual analysis is indispensable for providing expressive summaries and preparing decision-making. We present the visual analysis approach and software MooViE, which is designed to strike…
Gergely Zahoránszky-Kőhalmi, Brandon Walker, Nathan Miller, Brett Yang + 11 more
The recent SmartGraph platform facilitates the execution of complex drug-discovery workflows with ease in the network-pharmacology paradigm. However, at the time of its publication, we identified the need for the development of an Application Programming Interface (API) that could promote biomedical data integration…
Authors not listed
Here, we present MolPic, an open-source Python-based software that can be used to generate high-resolution, publication-quality molecular figures directly from compound names or SMILES strings. MolPic supports single-molecule rendering, batch processing, and automated multi-panel 2D figure generation, which are…