22 papers · ranked by Valyu relevance
Li Tao, Rubing Huang, Chenhui Cui, Dave Towey + 3 more
'Wen Xia'] As one of the most popular software applications, a web application is a program, accessible through the web, to dynamically generate content based on user interactions or contextual data, for example, online shopping platforms, social networking sites, and financial services. Web applications operate in…
Milind Agarwal, Kshitiz Ghimire, Joy D. Cogan, Janet Markle
Whole exome sequencing (WES) is commonly used to study monogenic diseases. The application of this sequencing technology has gained in popularity amongst clinicians and researchers as WES pricing has declined. The accumulation of WES data creates a need for a robust, flexible, scalable and easy-to-use analytics…
Guangsheng Yu, Xu Wang, Qin Wang, Tingting Bi + 4 more
'Ren Ping Liu' 'Nektarios Georgalas' 'Andrew Reeves'] GUANGSHENG YU, Data61, CSIRO, Australia XU WANG, GBDTC, University of Technology Sydney, Australia QIN WANG, Data61, CSIRO, Australia TINGTING BI, Data61, CSIRO, Australia YIFEI DONG, GBDTC, University of Technology Sydney, Australia REN PING LIU, GBDTC, University…
Ruijie Ren, Xiang-e Sun, Lin Hu
Currently, using MATLAB Web App Server to deploy MATLAB Web applications for hosting and sharing interactive Web applications involves the following problems: slow loading of applications, incompatibility with some browser versions, and various shortcomings of deployment tools, such as poor scalability and difficulty…
Authors not listed
Because topology plays a key role in many chemical and physical properties of materials, identification of topology from crystalline structures is a common and important task in materials science. We present here a new web application, CrystalNets, whose user-friendly interface allows scientists to identify and…
Authors not listed
The exponential growth of chemical literature necessitates the development of automated tools for extracting and curating molecular information from unstructured scientific publications into open-access chemical databases. Current optical chemical structure recognition (OCSR) and named entity recognition solutions…
Gáspár Lukács, Erwin Haasnoot
The present tutorial provides a technical overview of how to create web applications for online psychological experiments from scratch via the HTML/CSS/JavaScript framework. This approach allows virtually unlimited flexibility in accomplishing anything in an online experiment that a regular computer (or smartphone…
Tom David Müller, Arslan Siraj, Axel Walter, Jihyung Kim + 9 more
Building User-Friendly Solutions for MS Analysis Authors: ['Tom David Müller' 'Arslan Siraj' 'Axel Walter' 'Jihyung Kim' 'Samuel Wein' 'Johannes von Kleist' 'Ayesha Feroz' 'Matteo Pilz' 'Kyowon Jeong' 'Justin Cyril Sing' 'Joshua Charkow' 'Hannes Luc Röst' 'Timo Sachsenberg'] Liquid chromatography-mass spectrometry…
Maicon Azevedo da Luz, Kleinner Farias
Companies developing Web applications have faced an increasing demand for high-quality products with low cost and production time ever smaller. However, developing such applications is still considered a time-consuming and error-prone task, mainly due to the difficulty of promoting the reuse of features (or…
Javier Jimenez-Honrado, Javier Gomez Garcia, Felipe Costa-Tebar, Felix A. Marco + 2 more
In spite of all advances promoted by information technologies, there are still activities where this technology is not applied for reasons such as being carried out in non-profit organizations or because they have not adapted to this modernization. Until recently, the way to work with mobile devices was either by…
Zvi Baratz, Yaniv Assaf
The goal of this article is to present “The Labbing Project”; a novel neuroimaging data aggregation and preprocessing web application built with Django and VueJS. Neuroimaging data can be complex and time-consuming to work with, especially for researchers with limited programming experience. This web application aims…
Onyeka Ezenwoye, Yi Liu
Web applications are becoming more ubiquitous. All manner of physical devices are now connected and often have a variety of web applications and web-interfaces. This proliferation of web applications has been accompanied by an increase in reported software vulnerabilities. The objective of this analysis of…
Keiichiro Ono, Dylan Fong, Chengzhan Gao, Christopher Churas + 13 more
'Rudolf Pillich' 'Joanna Lenkiewicz' 'Dexter Pratt' 'Alexander\xa0R Pico' 'Kristina Hanspers' 'Yihang Xin' 'John Morris' 'Mike Kucera' 'Max Franz' 'Christian Lopes' 'Gary Bader' 'Trey Ideker' 'Jing Chen'] Title: Abstract Since its introduction in 2003, Cytoscape has been a de facto standard for visualizing and…
Federico Marotta, Oliver Stolpe, Benedikt Obermayer, January Weiner + 3 more
In many bioinformatic data analysis projects, it is convenient to visualize plots and results through an interactive web app or dashboard. These interactive reports can then be shared with customers, collaborators, or the general public. Publishing and sharing these apps is not straightforward, becoming especially…
Babu R. Dawadi, Bibek Adhikari, Devesh K. Srivastava, Valderi R. Q. Leithardt
'Valderi R. Q. Leithardt'] New techniques and tactics are being used to gain unauthorized access to the web that harm, steal, and destroy information. Protecting the system from many threats such as DDoS, SQL injection, cross-site scripting, etc., is always a challenging issue. This research work makes a comparative…
Muhammed Ersin Durmuşkaya, Selim Bayraklı, Davide Chicco
The increasing reliance on web applications for storing sensitive data and financial transactions has elevated the importance of web application security. A machine learning-based web application firewall was designed to protect web applications against injection vulnerabilities. A hybrid dataset, including CISC 2010…
Kota Kambara, Sintho Wahyuning Ardie, Daisuke Tsugama
Differential gene expression analysis (DEA) via RNA sequencing (RNA-seq) is essential but remains challenging for wet-lab biologists due to command-line complexities. Centralized web platforms democratize this process but suffer from server congestion, long queuing delays, data privacy risks with proprietary datasets…
Authors not listed
Modern drug discovery and chemical biology research relies heavily on analyzing bioassay data. One of the many challenges in bioassay data analysis is identifying false trails, i.e., chemical compounds which initially appear to have desirable activity but are found to be problematic upon further investigation. Badapple…
Authors not listed
For decades, molecular visualization software has been fundamental to education and research in chemistry, structural biology, and materials science. These tools have enabled the inspection of structures, dynamics, and interactions, yet their reliance on two-dimensional (2D) interfaces imposes persistent limitations.…
Richard Posert, Isabelle Baconguis
Chromatography is an essential family of assays for molecular biology and chemistry. Typically, only a qualitative assessment of peak height, position, and shape are sufficient to proceed. However, there are more advanced forms of chromatography that require integration of peak width, baseline subtraction, and precise…
Samantha Durdy, Cameron J. Hargreaves, Mark Dennison, Benjamin Wagg + 5 more
The discovery of new materials often requires collaboration between experimental and computational chemists. Web based platforms allow more flexibility in this collaboration by giving access to computational tools without the need for access to computational researchers. We present Liverpool Materials Discovery Server…
Authors not listed
Machine learning models are transforming data-driven research across scientific disciplines, yet their deployment as accessible and reliable web services remains a significant challenge. We introduce the NERDD framework, a scalable, maintainable, and secure microservices platform designed to support the sustainable…